PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g057550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 28633.9 Da PI: 4.2226 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.1 | 1.4e-10 | 10 | 47 | 13 | 50 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f kR g KKA ELSvLC+ v i +++++ ++ ++ Csa12g057550.1 10 FQKRFPGFKKKATELSVLCGNSVGFICYGPNNDVQVWP 47 889999****************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.59E-13 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-9 | 10 | 46 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.316 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAPPQEENFF QKRFPGFKKK ATELSVLCGN SVGFICYGPN NDVQVWPEPQ DNPQALTGIV 60 GKFNALSDQK RKNHACDLYD FVSDINGLSG EDLRRHIDKL NSQLVGIKQR KICVLRRGDS 120 KNPKPKETEE DDHIRVSENA TITNCNVAMM PEDRLGFDEF PNYHETDSSL GSYAAFTDVG 180 VSEDSSLLDP FTFGDYFPVD PIPMPPTDNF GVDGLWDLCG MDLEFSSLFP GYDPLPTDSF 240 MSSYQTPVIE DFGSVF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g057550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084806.1 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL49 | ||||
TrEMBL | D7KXG1 | 1e-82 | D7KXG1_ARALL; Uncharacterized protein | ||||
STRING | XP_010451530.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11232 | 9 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59810.1 | 5e-58 | AGAMOUS-like 50 |