PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g057430.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24492.9 Da PI: 4.202 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.9 | 1.8e-08 | 134 | 181 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +i A++ +++L Csa12g057430.2 134 TKACRERLRREKLNERFMDLSSVLDPG---RTPKTDKPAIIDDAIRILNQL 181 5678**********************8...8****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.004 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-6 | 134 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.59E-7 | 134 | 184 | No hit | No description |
SuperFamily | SSF47459 | 3.79E-12 | 136 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-7 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-11 | 137 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MYPSLDEEDF VSDLFCFDQS NGAELDDYTQ FGVTLQPNQE DTFPDFVSYG VNLQQESGEV 60 FSIGAQLDLS SFDGVLPQEP EQLGGKDCGI VQEEEVEIDS GSSGGAVKQE QEHLDDDFSR 120 KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLDPG RTPKTDKPAI IDDAIRILNQ 180 LRDEAHKLEE TNQKLLEEIK SLKSVRDTSR DQELRPPAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g057430.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088053 | 0.0 | AY088053.1 Arabidopsis thaliana clone 40736 mRNA, complete sequence. | |||
GenBank | AY102106 | 0.0 | AY102106.1 Arabidopsis thaliana AT4g14410/dl3245w mRNA, complete cds. | |||
GenBank | AY133565 | 0.0 | AY133565.1 Arabidopsis thaliana At4g14410/dl3245w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450041.1 | 1e-148 | PREDICTED: transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 1e-121 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | R0F5N0 | 1e-131 | R0F5N0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010450041.1 | 1e-147 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 1e-112 | bHLH family protein |