PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g053280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 258aa    MW: 28198.3 Da    PI: 10.6927
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g053280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67e-18110144135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++
  Csa12g053280.1 110 CVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQ 144
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.7E-11104156IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.215104159IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11105143No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14108144IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.71E-11109143No hitNo description
PfamPF003208.8E-16110144IPR000679Zinc finger, GATA-type
PROSITE patternPS003440110135IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
FVLSVTPLRR LSLSSLSSSS LSLSLSVSLR FTEPSEVSDR SLILSFPLFL KLKLKLEERV  60
SIILNLCFSW INMSMTEETK TKLESAGDSS DVDNGNCSSS GSGGDTKKTC VDCGTSRTPL  120
WRGGPAGPKS LCNACGIKSR KKRQAALGIR QEDNRIKNKT SNNLNLENRN VKIGKGEPGN  180
VKARIIKTDA ENYSSSNNTN NNNSNSSKKN VKRVSRFLDF GFKVPAMKRS AVEKKRLWRK  240
LGEEERAAVL LMALSCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g053280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190211e-118AK119021.1 Arabidopsis thaliana At4g16141 mRNA for unknown protein, complete cds, clone: RAFL21-34-K14.
GenBankAK2280251e-118AK228025.1 Arabidopsis thaliana mRNA for hypothetical protein, partial sequence., clone: RAFL14-54-B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449847.11e-131PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB54e-64GAT17_ARATH; GATA transcription factor 17
TrEMBLR0F6T54e-89R0F6T5_9BRAS; Uncharacterized protein
STRINGXP_010449847.11e-130(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.19e-77GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]