PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g051780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7117.34 Da    PI: 10.8164
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g051780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.6e-121857443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v  skRr++++ KA  L+ L +a++av + s+ 
  Csa12g051780.1 18 DTKQQRSVACSKRRQTLFSKAADLCLLSGANIAVFVTSPA 57
                    56899*******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-11764IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.264755IPR002100Transcription factor, MADS-box
CDDcd002661.04E-18864No hitNo description
SuperFamilySSF554552.22E-13958IPR002100Transcription factor, MADS-box
PfamPF003192.5E-112058IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MTMKRGGTKI KIEIKKRDTK QQRSVACSKR RQTLFSKAAD LCLLSGANIA VFVTSPAENN  60
DVVY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g051780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451454.12e-34PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0H9P91e-29R0H9P9_9BRAS; Uncharacterized protein
STRINGXP_010451454.16e-34(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.16e-31M-type_MADS family protein