PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g051750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 300aa    MW: 33596.1 Da    PI: 8.5713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g051750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13152198455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Csa12g051750.1 152 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 198
                     799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-131058IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.234148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-18148214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-13151202No hitNo description
PfamPF000102.2E-10152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-17152214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNYLPSCLSY YRVRSFLARS AGFQTVLSVP VNCGVVELGS LRNIPEDKSV IEMVKSVFGG  60
SDFVQAKEAP KIFGRQLSLG GSKPRSMSIN FSPKTEADTG FSLESFEVQA IGGSNQVYPY  120
EQGKDETLYL TDEQKPRKRG RKPANGREEA LNHVEAERQR REKLNQRFYA LRAVVPNISK  180
MDKASLLADA ITYITDMQKK IRVYETEQQI LKRRESNQIT PAEVDYQQRH DDAVVRLSCP  240
LETHPVSKVI QTLRENEVTP HDSSVAVTEE GVVHTFTLRP QGGCTAEQLK DRLLASLAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26146229281Transcription factor MYC2
5gnj_B2e-26146229281Transcription factor MYC2
5gnj_E2e-26146229281Transcription factor MYC2
5gnj_F2e-26146229281Transcription factor MYC2
5gnj_G2e-26146229281Transcription factor MYC2
5gnj_I2e-26146229281Transcription factor MYC2
5gnj_M2e-26146229281Transcription factor MYC2
5gnj_N2e-26146229281Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g051750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankAY0576260.0AY057626.1 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds.
GenBankBT0023010.0BT002301.1 Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434826.10.0PREDICTED: transcription factor bHLH3
RefseqXP_010434827.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLR0GXH80.0R0GXH8_9BRAS; Uncharacterized protein
STRINGXP_010451453.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]