PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g048260.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 285aa MW: 31590.5 Da PI: 8.9942

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g048260.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k Csa12g048260.1 136 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 190 677889***********************************************98 PP
2	HD-ZIP_I/II	122.8	1.7e-39	136	225	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l Csa12g048260.1 136 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 225 69*************************************************************************************9.54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	8.7E-28	2	97	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	1.2E-18	117	190	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.68E-19	120	193	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	132	192	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	134	196	IPR001356	Homeobox domain
CDD	cd00086	1.11E-15	136	193	No hit	No description
Pfam	PF00046	1.5E-16	136	190	IPR001356	Homeobox domain
PRINTS	PR00031	7.5E-6	163	172	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.5E-6	172	188	IPR000047	Helix-turn-helix motif
SMART	SM00340	1.8E-23	192	235	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	8.1E-8	192	226	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MMMGKEDLSL SLSLGFAQNH NPVQLNLKPT SSPVSNLQMF PWNQTFVSSS GHQKQQFLRK 60 IDVNSLPTTV DLEEETGVSS PNSTISSTVS GKRRSDREGT SGGGGGAGDD IDVTLDRSSS 120 RGTSDEEEDY GGETCRKKLR LSKDQSAVLE DTFKEHNTLN PKQKLALAKK LGLTARQVEV 180 WFQNRRARTK LKQTEVDCEY LKRCVEKLTE ENRRLEKEAA ELRALKLSPR LYGQMSPPTT 240 LLMCPSCERV AGPSSSNHNQ RSVSLSPWLQ MAHGSTFDVM RPRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	192	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g048260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441252	0.0	AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1.
GenBank	AK228587	0.0	AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21.
GenBank	ATU09332	0.0	U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds.
GenBank	AY087322	0.0	AY087322.1 Arabidopsis thaliana clone 34167 mRNA, complete sequence.
GenBank	BT005756	0.0	BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
GenBank	BT006112	0.0	BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010449617.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT1-like
Swissprot	P46600	0.0	HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBL	R0H129	0.0	R0H129_9BRAS; Uncharacterized protein
STRING	XP_010449617.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1563	26	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	1e-168	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Tan W, et al. Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought. PLoS Genet., 2018. 14(4): p. e1007336 [PMID:29659577]