PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g045650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 623aa MW: 67448.9 Da PI: 4.5971 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 452 | 497 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Csa12g045650.1 452 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 497 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-54 | 67 | 273 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 448 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.31E-14 | 451 | 501 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-18 | 451 | 518 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 452 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-18 | 452 | 517 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.8E-16 | 454 | 503 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MSPTSVQLTD YHLDHSTDGT TNLWSTEDDA SVMEAFIGGS DHSSLFPPLP PPPLAPPALS 60 QVNEDTLQQR LQALIEGANE SWTYAVFWQL SYEFAGEDVE EGRVGGGLTN NNNMALLGWG 120 DGYYKGEEEK SRKKKTNPAS AAEQEHRKRV VRELNALITG VGGEVVNSGG GGGSDEAGDE 180 EVTDTEWFFL VSMTQSFING TGLPGQAFSS SNTIWLSGSN ALAGSSCERA RQGQIYGLQT 240 MVCVPCENGV VELGSSEVIH QSSDLVDKVD TFFNFNNGGG GGCESGSWAF NLNPDQGEND 300 PGLWISEPGV ELGLVPPVII NTGNNSTSNS DSQPVSKLCN GGSSVENPKP QVEMVSFKNG 360 VENGFSSGQS RFMGEDSSNK KRSPVSNNEE GMLSFTSVSV LPRPAKSGDS NHSVLEASVV 420 KEAESNRTVV EPEKKPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYS LRAVVPNVSK 480 MDKASLLGDA ISYINELKSK LLKAESDKEE LQKQIDGMSK EAANGKSLVK ERNQEPGVSV 540 DMEVDVKIIG WDAMIRVQCS KRNHPGAKFM EALKELDLEV NHASLSVVND LMIQQATVKM 600 GNEFFTQDQL KVALMEKVGE CS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 2e-86 | 20 | 269 | 3 | 227 | Transcription factor MYC3 |
4ywc_A | 2e-86 | 20 | 269 | 3 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-86 | 20 | 269 | 3 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 433 | 441 | KKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g045650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251689 | 0.0 | AF251689.1 Arabidopsis thaliana putative transcription factor BHLH4 (BHLH4) mRNA, complete cds. | |||
GenBank | AK221507 | 0.0 | AK221507.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH4, complete cds, clone: RAFL07-57-K04. | |||
GenBank | AL021889 | 0.0 | AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project). | |||
GenBank | AL161547 | 0.0 | AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449546.1 | 0.0 | PREDICTED: transcription factor MYC4-like | ||||
Swissprot | O49687 | 0.0 | MYC4_ARATH; Transcription factor MYC4 | ||||
TrEMBL | R0F4A8 | 0.0 | R0F4A8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010449546.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 0.0 | bHLH family protein |