PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g045480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 364aa    MW: 41393.3 Da    PI: 7.9073
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g045480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.59.1e-5261351128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+ +yL +kveg ++el evi+ +++yk++Pw+Lp k  + +++ ew+fF+++dkky++g+r+nratk+gyWkatgkd++++
  Csa12g045480.1   6 LPPGFRFHPTDEELIGYYLSRKVEGLEIEL-EVIPVIELYKFDPWELPdKsFLPNRDLEWFFFCPKDKKYPNGSRTNRATKAGYWKATGKDRKIT 99 
                     79****************************.99**************95434455677************************************* PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +k +   +g +ktLvfy+grap ge+t+W+mheyrl
  Csa12g045480.1 100 CKsSCVIIGYRKTLVFYEGRAPLGERTNWFMHEYRL 135
                     *8444569**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-593159IPR003441NAC domain
PROSITE profilePS5100557.6766159IPR003441NAC domain
PfamPF023657.4E-297135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSSSLPPGF RFHPTDEELI GYYLSRKVEG LEIELEVIPV IELYKFDPWE LPDKSFLPNR  60
DLEWFFFCPK DKKYPNGSRT NRATKAGYWK ATGKDRKITC KSSCVIIGYR KTLVFYEGRA  120
PLGERTNWFM HEYRLCDDDL SQKSLNCKGP FVICRVTKKN ELKTNSKSLK NKSEQDIGSG  180
YSSLATSPCR DEASQFQSFK PSATTNDSSS IWVSPDFILD SSKGPFVICR VTKKNELKTN  240
SKSLKNKSEQ DIGSGYSSLA TSPCRDEASQ FQSFKPSATT NDSSSIWVSP DFILDSSKDY  300
LQIQEVASEY FPNYNIPVNT ANSHVKFPAS SSYFNVDQYI IDQQTWTNYK YDQTASFDYS  360
NHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-50516016166NO APICAL MERISTEM PROTEIN
1ut4_B1e-50516016166NO APICAL MERISTEM PROTEIN
1ut7_A1e-50516016166NO APICAL MERISTEM PROTEIN
1ut7_B1e-50516016166NO APICAL MERISTEM PROTEIN
4dul_A1e-50516016166NAC domain-containing protein 19
4dul_B1e-50516016166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g045480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0218891e-85AL021889.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K21 (ESSA project).
GenBankAL1615471e-85AL161547.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47.
GenBankCP0026871e-85CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089415.11e-165PREDICTED: NAC domain-containing protein 86-like
SwissprotO496971e-137NAC71_ARATH; NAC domain-containing protein 71
TrEMBLR0F2D01e-150R0F2D0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010449530.11e-164(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-119NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]