PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g043030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 435aa    MW: 50919.9 Da    PI: 6.721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g043030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-18224270148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
   Csa12g043030.1 224 KGQWTSEEDRILIQLVEKHGLRKWSHIAQVLP-GRIGKQCRERWHNHL 270
                      799*****************************.*************97 PP
2Myb_DNA-binding521.6e-16276318145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
   Csa12g043030.1 276 KETWSEEEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 318
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.902219274IPR017930Myb domain
SuperFamilySSF466892.77E-32222317IPR009057Homeodomain-like
SMARTSM007171.5E-17223272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-26225274IPR009057Homeodomain-like
PfamPF139213.9E-20227284No hitNo description
CDDcd001672.67E-15227270No hitNo description
PROSITE profilePS5129421.16275325IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-22275323IPR009057Homeodomain-like
SMARTSM007174.8E-16275323IPR001005SANT/Myb domain
CDDcd001678.00E-12278321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MENFVDESGF VPLNQNIFTR DHHQEHMKEE DFPFEVVDQS KPTSFLQDFH HLDHDHQFDH  60
HHGSSSSNHL LGLQTTSSCI NNAPFEHCSY QENMVEFYES KPQLLNHHFQ AAENPTYFTR  120
NHQHHHHHHH HQEINLVDEH DHMDLEQNNM MMMRMIPFDY PPTETMKPAM NFVMPDEISC  180
VSADNDCYRS SSSFNKTKPY LTRKLSSSSS SSSWKEKKPS TLVKGQWTSE EDRILIQLVE  240
KHGLRKWSHI AQVLPGRIGK QCRERWHNHL RPDIKKETWS EEEDRVLIEF HKEIGNKWAE  300
IAKRLPGRTE NSIKNHWNAT KRRQFSKRKC RSKYPRPSLL QDYIKSLNLG VLSATSVPAR  360
GRRRESNKKK DVVIAAVEEK KEQEEIYGQD RVVPECVFTD DFGFNEKLLE EGCSIDSLLD  420
DIPQPDIDAF VHGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-442223252105C-Myb DNA-Binding Domain
1msf_C2e-442223252105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g043030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1980820.0DQ198082.1 Arabidopsis thaliana myb family transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449469.10.0PREDICTED: transcription factor MYB98
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLR0F8H60.0R0F8H6_9BRAS; Uncharacterized protein
STRINGXP_010449469.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]