 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa12g042160.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
| Family | CAMTA | ||||||||
| Protein Properties | Length: 1596aa MW: 182719 Da PI: 8.202 | ||||||||
| Description | CAMTA family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CG-1 | 172.5 | 6e-54 | 13 | 129 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95
++e + rwlk+ e++ iL+n+e+ +lt+++++rp+sgsl+L+nrk++++frkDG++w++kkdg+++ E+he+LKvg+v++l+cyYah+e+ ptfq
Csa12g042160.1 13 YQEaQIRWLKPPEVLFILQNHERLTLTHTAPQRPTSGSLFLFNRKVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVDALNCYYAHGEHSPTFQ 107
566689***************************************************************************************** PP
CG-1 96 rrcywlLeeelekivlvhylev 117
rr+yw+L+ e+e+ivlvhy++v
Csa12g042160.1 108 RRIYWMLDPEYEHIVLVHYRDV 129
*******************987 PP
| |||||||
| 2 | B3 | 54.7 | 1.8e-17 | 264 | 366 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+ l+++dv + + l++ + a+++ g +e+ +++ed++g+ W + ++y + ++++ +t+GW+++vk+n+L +gD+v F++++ +
Csa12g042160.1 264 FEMRLKTNDVDNVDSLIITDEDARNYfpftnfqG-GTES--LIRFEDQDGKGWLFGYSYHNIGSQCEFTRGWSRYVKENQLSVGDSVFFQRHRMD 355
56678999***************999****9844.4333..7*****************999999*************************76557 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
+ +++++ +r+
Csa12g042160.1 356 SSKFFIGCRRH 366
77778888886 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51437 | 76.037 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
| SMART | SM01076 | 6.4E-80 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
| Pfam | PF03859 | 1.2E-47 | 15 | 129 | IPR005559 | CG-1 DNA-binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 256 | 375 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.55E-16 | 263 | 365 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.97E-13 | 263 | 365 | No hit | No description |
| PROSITE profile | PS50863 | 11.42 | 264 | 367 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 5.8E-5 | 264 | 366 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.0E-15 | 264 | 366 | IPR003340 | B3 DNA binding domain |
| Pfam | PF01582 | 1.5E-8 | 430 | 545 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52200 | 3.27E-11 | 433 | 538 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| Gene3D | G3DSA:3.40.50.10140 | 6.5E-4 | 434 | 518 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
| SuperFamily | SSF52540 | 7.83E-39 | 572 | 824 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 7.5E-19 | 595 | 829 | IPR002182 | NB-ARC |
| Gene3D | G3DSA:3.40.50.300 | 6.5E-4 | 596 | 626 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| PRINTS | PR00364 | 8.8E-20 | 598 | 613 | No hit | No description |
| PRINTS | PR00364 | 8.8E-20 | 674 | 688 | No hit | No description |
| PRINTS | PR00364 | 8.8E-20 | 765 | 779 | No hit | No description |
| SuperFamily | SSF46785 | 2.2E-6 | 801 | 904 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
| Gene3D | G3DSA:3.40.50.300 | 6.5E-4 | 852 | 903 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| SuperFamily | SSF52058 | 3.74E-33 | 925 | 1166 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 5.9E-26 | 927 | 1171 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF07725 | 1.3E-9 | 988 | 1007 | IPR011713 | Leucine-rich repeat 3 |
| PRINTS | PR00364 | 8.8E-20 | 1077 | 1093 | No hit | No description |
| PROSITE profile | PS51450 | 5.063 | 1081 | 1100 | IPR001611 | Leucine-rich repeat |
| PROSITE profile | PS51450 | 5.71 | 1102 | 1123 | IPR001611 | Leucine-rich repeat |
| SuperFamily | SSF52047 | 5.26E-18 | 1119 | 1165 | No hit | No description |
| SMART | SM00369 | 24 | 1123 | 1147 | IPR003591 | Leucine-rich repeat, typical subtype |
| PROSITE profile | PS51450 | 4.816 | 1125 | 1148 | IPR001611 | Leucine-rich repeat |
| SuperFamily | SSF52047 | 5.26E-18 | 1226 | 1335 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 2.8E-12 | 1232 | 1331 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Pfam | PF13855 | 1.4E-6 | 1246 | 1301 | IPR001611 | Leucine-rich repeat |
| SMART | SM00369 | 3.9 | 1266 | 1289 | IPR003591 | Leucine-rich repeat, typical subtype |
| PROSITE profile | PS51450 | 7.05 | 1268 | 1289 | IPR001611 | Leucine-rich repeat |
| PROSITE profile | PS51450 | 5.679 | 1291 | 1313 | IPR001611 | Leucine-rich repeat |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0007165 | Biological Process | signal transduction | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1596 aa Download sequence Send to blast |
MAMQSEYEIT TLYQEAQIRW LKPPEVLFIL QNHERLTLTH TAPQRPTSGS LFLFNRKVLK 60 FFRKDGHQWR RKKDGRAIAE AHERLKVGNV DALNCYYAHG EHSPTFQRRI YWMLDPEYEH 120 IVLVHYRDVI NLKEVTSPIS HSCSGSGITD DEKFEAADVG CRDPFEELKA FFEFLKNSKP 180 PRSLSDCTAN DAVEFLRRMP SDKVEAVVRS VSGDTFKRIL GSHNENPFDS QIVRTFLMEL 240 AEEQTSQKEF FKNMLSHHTK EDLFEMRLKT NDVDNVDSLI ITDEDARNYF PFTNFQGGTE 300 SLIRFEDQDG KGWLFGYSYH NIGSQCEFTR GWSRYVKENQ LSVGDSVFFQ RHRMDSSKFF 360 IGCRRHNAGA APASSSQSAA LNPTSPATSK MKLELREKLK EVEIPFQQGL PEHSITGSDP 420 ILVISCGKNQ DSEETYFISC IYNELCRRGF TTCSYDLDRS TMTGDPDTLY RSRVCIMIIT 480 MNYARSRECL AKFTVIMGHL EAINLALLPV FFNVIPGSFE NSVHAFEVHK WRKAMNKLFV 540 YNGKQYIKGD ECMLAKIIVR DVSLLIGFEA GRNLIGIKLL LGSILPLIHC HQPSAPQIVG 600 LWGMAGIGKT AITREIYRTQ AQRYDLSYFL PDLHLMCQTK GLSHLRDDFF SKIFGEERVF 660 IDTYDTKISF TRNRFLDKKI LIVLDGVSNV RDAEVVVGGF GWFSGGHTII LTSRNRQVLV 720 QCKANELYEI PKLSEYESYC LCCQFATEQK WKARRSLISE VLNYASGIPL ALRVLCSALQ 780 KQCINDEKQH LRRLRQHPPI EIQDAFRNSF NELHDNEKDI FLDLACFFRG ENKDYVVKIL 840 DGCGFFTDLG VHALIDESLI SLVDNKLEMP NFFQDMGRFV VCQEYEAAGK RTRLWDSNDI 900 ADVLTNKTGT EAIEGIFLDM SGLSFELSPA VFERMHRLRL LKIHCPTSEN DCKVCLREGL 960 YSLSDELRLL HWERYPLGSL PRNFNPKNLV ELNMPYSNMT KLWKGTKNLE KLNRIILSHS 1020 RQLNKFPRLS KAKNLEHIDL EGCTSLVKVN SSILHHHKLT FLSLKDCSHL RIMPATVHLE 1080 SLEVLNLSGC SDLEDLHDFS PNLKELYLAG TAIREMPPSI DELTRLVTLD LENCKRLQHL 1140 PPGISNLKVI VTLKLSGCSN LRNLPIPDTF FLRDSQRLQR KITTEEYVPL KLHSAMQESR 1200 DVVEEILSAF EYLSSKGIPQ ESWPWVTITP LPSSILHSLA SRLNALVTLF LCKSYLVDIT 1260 DELCRLTSLK ALDLGGNSFS QIPESIKELR KLHNLRLRHC KNLTSLPELP SSLKFLNAHG 1320 CVALKSISLE QFPRHYTFSN CFALSPEVFR KYMKRALDSV EVMAKGHQQE HNNPLAFSIC 1380 IPAYAGHEFS FNFRAGSSVM IELTPGMLRS LSGFTLSVVV EFRDNYRNVA GFGIKCICRK 1440 ARRDLSPRLE RIFHCWAPKE APTVRKDHMF VFGNAKMHPA DGIDHDFLAG WLTFEFHPVN 1500 WKNKLLDDSC TVKRCAVYLI TTTTCDKTHG AKRPSSMNLE EISSVEHLAP PYKRCRLKRV 1560 IESVILNLRK RKRENSVSDK KNISHTRPSI NPKQV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wid_A | 2e-15 | 261 | 379 | 11 | 130 | DNA-binding protein RAV1 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1510 | 1514 | TVKRC |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa12g042160.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010449344.1 | 0.0 | PREDICTED: disease resistance protein RRS1-like isoform X1 | ||||
| Refseq | XP_010449345.1 | 0.0 | PREDICTED: disease resistance protein RRS1-like isoform X1 | ||||
| TrEMBL | A0A1J3CDU9 | 0.0 | A0A1J3CDU9_NOCCA; Disease resistance protein RRS1 | ||||
| STRING | XP_010449343.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5462 | 9 | 20 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G45260.1 | 1e-157 | Disease resistance protein (TIR-NBS-LRR class) | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|