PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g037530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 210aa    MW: 23226.8 Da    PI: 9.0148
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g037530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.94e-372176560
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     + c+rC s ntkfCyynny++sqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+
  Csa12g037530.1 21 PQVCARCSSVNTKFCYYNNYNMSQPRYFCKECRRYWTQGGTLRNVPVGGGCRKPKR 76
                    678**************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-22876IPR003851Zinc finger, Dof-type
PfamPF027011.2E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7732276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDNVSVFAKG ENQLNGEKPP PQVCARCSSV NTKFCYYNNY NMSQPRYFCK ECRRYWTQGG  60
TLRNVPVGGG CRKPKRPRIE QSSVSQVATF ENQPVNHQPL RLVHENNESV GLFGGSTSSS  120
SSPAAVAAVL GKHLGYLAEL RGVTNVPQVR GLRPVLLDRL DFVDQHKWNQ SINNTMNVNH  180
EASSSGSRGS SDTETNSNND NKDQKYLFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g037530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449133.11e-156PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA92e-61DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLD7MFF81e-71D7MFF8_ARALL; Dof-type zinc finger domain-containing protein
STRINGXP_010449133.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-58Dof-type zinc finger domain-containing protein