PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g037480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 255aa    MW: 28491.4 Da    PI: 8.1322
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g037480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.42e-352279461
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      ++c+rC s+ntkfCy+nn+ +sqPryfCk+C+ryWt+GGalrnvP+Ggg+rk k++
  Csa12g037480.1 22 PPRACARCSSNNTKFCYFNNHRVSQPRYFCKNCHRYWTHGGALRNVPIGGGCRKAKQA 79
                    5679**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-211978IPR003851Zinc finger, Dof-type
PfamPF027017.2E-302478IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.0932478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDNLIVFVDE DDNQQLNGEK PPPRACARCS SNNTKFCYFN NHRVSQPRYF CKNCHRYWTH  60
GGALRNVPIG GGCRKAKQAR KDKSPVSRMV SPDIQQITPD IQQVNHQPFS YVQESNEFVG  120
SFGASSSSGA VATVGNHFGS LSDIRGSMVP YVPPPSQSFQ PNHRLDFQDG SFEHDYYNVG  180
SSTNPFINQS IGGGYVDNYN GYGMEQYKWN QSFNNTLTMN HDASTSGSRE SGMTMMNNDN  240
KNKIIYNSVI KHPF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g037480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449127.10.0PREDICTED: dof zinc finger protein DOF4.3-like
SwissprotQ9SUA97e-66DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLR0GXA83e-92R0GXA8_9BRAS; Uncharacterized protein
STRINGXP_010449127.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.15e-60Dof-type zinc finger domain-containing protein