PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g037400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 548aa    MW: 61181.6 Da    PI: 6.6894
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g037400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.83.1e-352782661
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    + c+rC s+ntkfCy+nny +sqPryfC++CrryWt+GGalrnvP+Ggg+rk k++
  Csa12g037400.1 27 RVCARCSSNNTKFCYFNNYRVSQPRYFCRNCRRYWTHGGALRNVPIGGGCRKAKQA 82
                    68**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-222481IPR003851Zinc finger, Dof-type
PfamPF027016.5E-302781IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.7262781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
PROSITE profilePS509125.576160214IPR009039EAR
PROSITE profilePS509125.576305359IPR009039EAR
PROSITE profilePS509125.599478532IPR009039EAR
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MREMDNLIVF ADEDDNQQLN GVKPPPRVCA RCSSNNTKFC YFNNYRVSQP RYFCRNCRRY  60
WTHGGALRNV PIGGGCRKAK QARKDKSPVS RMVSPDIQQV TPDIEQVNHQ PFSYVQESNE  120
FVGSFGASSS SVAAATVGNH FGSLSDIRGN MVPNVPPPSQ SFQPNHRLDF QDGSFEHDYY  180
NVGSSTNPFI NQSIGGGYVD NYNGYGMEQY KWNQSFNNTL TMNHDASTSG SRGSDMTMMH  240
NDNKNKIRYN SVNHQPFSYV QESNEFVGSF GASSSSVAAA TVGNHFGSLS DIRGNMVPNV  300
PPPSQSFQPN HRLDFQDGSF EHDYYNVGSS TNPFINQSIG GGYVDNYNGY GMEQYKWNQS  360
FNNTLTMNHD ASTSGSRGSD MTMMHNDNKN KIRYNSVIKH PCHLEKHASE KGGKETEKSP  420
DIQQVNHQPF SYVQESNEFV GSFDASSSSI AAATIGNHFG SLSDIRGNMV PNVPPLSQSF  480
QPNHRLDFQD GSFEHDYYNV GSSTNPFINQ SIGGGYVDNY NGYGMEQYKW NHSFNNTLTM  540
NHDVRQH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g037400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449125.11e-173PREDICTED: dof zinc finger protein DOF4.5-like
SwissprotQ9SUA93e-66DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLR0GXA82e-90R0GXA8_9BRAS; Uncharacterized protein
STRINGXP_010449119.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.16e-63Dof-type zinc finger domain-containing protein