PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g034580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 559aa    MW: 62665.8 Da    PI: 3.9223
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g034580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.4e-101349339
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    i  k  r v +skR +g+  KA EL+ L da++a++ 
  Csa12g034580.1 13 IGKKDSRAVAYSKRTKGLYSKAAELCRLADAQIAILA 49
                    667889****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.979348IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-7366IPR002100Transcription factor, MADS-box
CDDcd002667.74E-17583No hitNo description
SuperFamilySSF554551.83E-13577IPR002100Transcription factor, MADS-box
PfamPF003192.7E-91363IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MGGVKRKIPI EMIGKKDSRA VAYSKRTKGL YSKAAELCRL ADAQIAILAT PVSSNSNASF  60
YTFGHSSVDN VVAAFLANER PPPREDLGLG LGFWWEDERL AKSEDPEELR DAINSMSKML  120
QDLKELRSNA LQNRLDCDED VEKKKGLLLD GTHQNHTINP CDNNALLGNV DGCNQELLDI  180
DQIINFESTS SSVNSELENI SMVTPNHQNS FSDSKATVDE DLMLQISDNN NNNKKNVEEL  240
ENWDEFIQEL DLDEIIDFET NCMKSLEMDG VSMVTTNSET VGDGGFLVTH IDLDEDNLCF  300
SDYFNELTSS AQNSLQEDIY TTRLGLGFWW EDERLAKSED PEELRDAINS MSKMLQDLKE  360
LRSNALQNRL DCDEDVEKKK GLLLDGTHQN HTINPCDNNA LLGNVDGCNQ ELLDIDQIIN  420
FESTSSSVNS ELENISMVTP NHQNSFSDSK ATVDEDLMLQ ISDNNNNNKK NVEELENWDE  480
FIQELDLDEI IDFETNCMKS LEMDGVSMVT TNSETVGDGG FLVTHIDLDE DNLCFSDYFN  540
ELTSSAQNSL QEDIYTTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g034580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451268.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A178UP042e-98A0A178UP04_ARATH; AGL99
TrEMBLQ9LZ612e-98Q9LZ61_ARATH; AGAMOUS-like 99
STRINGXP_010451268.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04640.11e-101AGAMOUS-like 99