PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g030420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 628aa MW: 70900.2 Da PI: 7.0525 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.1 | 1.9e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + Csa12g030420.1 115 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 205 88****************************9643..445569************************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ Csa12g030420.1 206 NGELRVGVRRA 216 999******97 PP | |||||||
2 | Auxin_resp | 112 | 5.6e-37 | 241 | 320 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++ k++F v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+ Csa12g030420.1 241 ACHATQAKTMFIVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLE 320 6799**************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.84E-39 | 106 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-42 | 108 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.62E-21 | 113 | 215 | No hit | No description |
Pfam | PF02362 | 3.5E-22 | 115 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.731 | 115 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-24 | 115 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.1E-33 | 241 | 319 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.1E-12 | 494 | 603 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.85E-13 | 510 | 591 | No hit | No description |
PROSITE profile | PS51745 | 25.81 | 515 | 607 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MTNHGGEGLY DELWKLCAGP LVDVPQAGER VYYFPQGHME QLEASTQQDL NTRKPLFLLP 60 PKILCNVMNV RLQAEKDTDE VYAQITLIPV GTKVDEPMSP DPSPPETQKP KVHSFSKVLT 120 ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDTFV FLRGENGELR VGVRRANRQQ SSMPSSVISS HSMHLGVLAT 240 ACHATQAKTM FIVYYKPRTS QFIISLNKYL EAMNNKFSVG MRFKMRFEGE DSPERRYSGT 300 VIGVKDCSPH WKDSKWRCLE VHWDEPASIP RPDKVSPWEI EPFATSESVP QSVMLMKKRP 360 RQASEVSALG ITASNLWQSH EFAQSCLTSQ RSSSQQCYRD STEDAKKSDW LNNSYSVSNL 420 SKDSTLNDQM VSPVEQKKPE TTANYRLFGI DLMSSSLAAS EEKTAPMRPI NITKSTPDSN 480 SDPKSEISKV SEEKKQEPPQ TSPKEVQSKQ ISSTRSRTKV QMQGVPVGRA VDLTALNGYN 540 ELIDDLEKLF DIKGELQSRN QWEIVFTDDE GDMMLVGDDP WPEFCNMVKR IFIWSKEEVK 600 KMTPGNQLRM MLTEVETTIS KSDNHSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 7 | 343 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-164 | 7 | 343 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-164 | 7 | 343 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g030420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF082176 | 0.0 | AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448631.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A178V403 | 0.0 | A0A178V403_ARATH; Auxin response factor | ||||
STRING | XP_010448630.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |