PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g030340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 355aa    MW: 38241.8 Da    PI: 7.8419
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g030340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3952112262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Csa12g030340.1  52 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 112
                     7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-2645101IPR003851Zinc finger, Dof-type
PfamPF027013.5E-3353110IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9156110IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105894IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDTAHWPQEI VVKPLEEIVT NTCPKPQPQP LQPQQPPTAG AMGGERKARP EKDQAVNCPR  60
CNSTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNIP VGGGSRKNKR SHSSSISSSS  120
DISNNHSGST QPATKKHLSD HHHHLMSISQ QGLTGQNPKY LETAQQDLNL GFPPHGMIRT  180
NFTDLIHNIG NSSNNTNKSH NNNNPLLVSS CSAMATSSLD LIRNNSNNGN SSSSSFMGFP  240
VHNQDPTSGG FSMQDHYKPC NTNTTLLGFS LDHHHNNGFH GGFQGGEGGG EGGDDDVNGR  300
HLFPFEDLKL PVSSSSASVS VDINDHQKRG SSGGDAAATS GGYWTGMLSG GSWC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g030340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171530.0AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448615.10.0PREDICTED: dof zinc finger protein DOF4.6-like
SwissprotQ8LAP80.0DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLA0A1J3GCW00.0A0A1J3GCW0_NOCCA; Dof zinc finger protein DOF4.6
STRINGXP_010448615.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-149Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]