PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g030260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 336aa MW: 37189.2 Da PI: 9.7863 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.6 | 5e-24 | 81 | 125 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+ Csa12g030260.1 81 DQEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVES 125 68****************************************997 PP | |||||||
2 | QLQ | 53.5 | 7.1e-19 | 12 | 44 | 2 | 34 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 aF++aQ+q+L++Q +yKy++a++PvP+eLl + Csa12g030260.1 12 AFSNAQWQELERQRNIYKYMMASVPVPSELLSP 44 8*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.4E-11 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.8E-12 | 12 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.42 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.156 | 81 | 125 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-19 | 83 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGRSMSENAG VAFSNAQWQE LERQRNIYKY MMASVPVPSE LLSPFLKNHP STTNPDVTVA 60 VAKGGSLQLG IASIASNNTA DQEPWRCKRT DGKKWRCSRN VIPDQKYCER HTHKSRPRSR 120 KHVESSHQSS SHSDIRSSAK NVTSQFTRAY PQFYGQPVNQ VPVLSALPSA SSSYDHHRGV 180 RWYRKEDGSI GTLNPEIHGA VQLKVGSRRE LKRRFDYDLN FRQKEPVVDQ SFGALQSLLS 240 VNQTPHNQET RRFFVQGKQD EAMGSSLTLS MAGGGSMEEA EGTNQHHQWV SHEGPSWFYS 300 TTTPGGPLAE ALCLGVSTNN PSSSTTTSSC SRSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g030260.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL109619 | 1e-143 | AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project). | |||
GenBank | AL161561 | 1e-143 | AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61. | |||
GenBank | ATAC002343 | 1e-143 | AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence. | |||
GenBank | CP002687 | 1e-143 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448604.1 | 0.0 | PREDICTED: growth-regulating factor 8-like | ||||
Swissprot | Q9SU44 | 0.0 | GRF8_ARATH; Growth-regulating factor 8 | ||||
TrEMBL | D7M8X3 | 0.0 | D7M8X3_ARALL; Uncharacterized protein | ||||
STRING | XP_010448604.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7836 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 1e-156 | growth-regulating factor 8 |
Publications ? help Back to Top | |||
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