PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g030260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 336aa    MW: 37189.2 Da    PI: 9.7863
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g030260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.65e-2481125145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+
  Csa12g030260.1  81 DQEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVES 125
                     68****************************************997 PP

2QLQ53.57.1e-191244234
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34
                    aF++aQ+q+L++Q  +yKy++a++PvP+eLl +
  Csa12g030260.1 12 AFSNAQWQELERQRNIYKYMMASVPVPSELLSP 44
                    8*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.4E-111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.8E-121244IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.421247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.15681125IPR014977WRC domain
PfamPF088791.6E-1983124IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRSMSENAG VAFSNAQWQE LERQRNIYKY MMASVPVPSE LLSPFLKNHP STTNPDVTVA  60
VAKGGSLQLG IASIASNNTA DQEPWRCKRT DGKKWRCSRN VIPDQKYCER HTHKSRPRSR  120
KHVESSHQSS SHSDIRSSAK NVTSQFTRAY PQFYGQPVNQ VPVLSALPSA SSSYDHHRGV  180
RWYRKEDGSI GTLNPEIHGA VQLKVGSRRE LKRRFDYDLN FRQKEPVVDQ SFGALQSLLS  240
VNQTPHNQET RRFFVQGKQD EAMGSSLTLS MAGGGSMEEA EGTNQHHQWV SHEGPSWFYS  300
TTTPGGPLAE ALCLGVSTNN PSSSTTTSSC SRSSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g030260.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1096191e-143AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBankAL1615611e-143AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBankATAC0023431e-143AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBankCP0026871e-143CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448604.10.0PREDICTED: growth-regulating factor 8-like
SwissprotQ9SU440.0GRF8_ARATH; Growth-regulating factor 8
TrEMBLD7M8X30.0D7M8X3_ARALL; Uncharacterized protein
STRINGXP_010448604.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-156growth-regulating factor 8
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]