PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g029880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 309aa    MW: 33250.9 Da    PI: 5.787
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g029880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15214250135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ +g+
  Csa12g029880.1 214 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 250
                     ******999************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.8E-1477112IPR010399Tify domain
PROSITE profilePS5132014.62477112IPR010399Tify domain
PfamPF062002.0E-1279111IPR010399Tify domain
PROSITE profilePS5101711.985146188IPR010402CCT domain
PfamPF062033.1E-14146188IPR010402CCT domain
SuperFamilySSF577168.08E-13207262No hitNo description
SMARTSM004011.4E-17208261IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.633208269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-15212255IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.12E-16213259No hitNo description
PfamPF003205.3E-13214250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MYGRHSQPVL IPNNDSAGGG EDHVSASATS GHIPYDDMDE IPHPDSIYGG TGSDLIPDGS  60
QLVAHRSEPS ELLVSRPPEG ANQLTISFRG QVYVFDAVGP DKVDAVLSLL GGTTELASGP  120
QVMELAHQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR  180
NKGQFTSSKM TDGAYNSGTD QDSAQDDGHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA  240
CGLFWANRGT LRDLSKKTEE NQLPLIKMGE GGSIADADNS NSEPATVEED TSLVPLANGE  300
NSNVLGNH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g029880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0353100.0AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds.
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448560.10.0PREDICTED: GATA transcription factor 25
RefseqXP_010448561.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH60.0GAT25_ARATH; GATA transcription factor 25
TrEMBLR0H0400.0R0H040_9BRAS; Uncharacterized protein
STRINGXP_010448560.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.20.0GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]