PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g029880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 309aa MW: 33250.9 Da PI: 5.787 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48 | 1.7e-15 | 214 | 250 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ +g+ Csa12g029880.1 214 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWANRGT 250 ******999************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.8E-14 | 77 | 112 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.624 | 77 | 112 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.0E-12 | 79 | 111 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 11.985 | 146 | 188 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.1E-14 | 146 | 188 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 8.08E-13 | 207 | 262 | No hit | No description |
SMART | SM00401 | 1.4E-17 | 208 | 261 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.633 | 208 | 269 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.8E-15 | 212 | 255 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.12E-16 | 213 | 259 | No hit | No description |
Pfam | PF00320 | 5.3E-13 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 214 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MYGRHSQPVL IPNNDSAGGG EDHVSASATS GHIPYDDMDE IPHPDSIYGG TGSDLIPDGS 60 QLVAHRSEPS ELLVSRPPEG ANQLTISFRG QVYVFDAVGP DKVDAVLSLL GGTTELASGP 120 QVMELAHQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR 180 NKGQFTSSKM TDGAYNSGTD QDSAQDDGHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA 240 CGLFWANRGT LRDLSKKTEE NQLPLIKMGE GGSIADADNS NSEPATVEED TSLVPLANGE 300 NSNVLGNH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00451 | DAP | Transfer from AT4G24470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g029880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB035310 | 0.0 | AB035310.1 Arabidopsis thaliana mRNA for ZIM, complete cds. | |||
GenBank | AY086038 | 0.0 | AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448560.1 | 0.0 | PREDICTED: GATA transcription factor 25 | ||||
Refseq | XP_010448561.1 | 0.0 | PREDICTED: GATA transcription factor 25 | ||||
Swissprot | Q9LRH6 | 0.0 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | R0H040 | 0.0 | R0H040_9BRAS; Uncharacterized protein | ||||
STRING | XP_010448560.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 0.0 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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