PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g026600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 265aa    MW: 30362.7 Da    PI: 8.4889
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g026600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.7e-141259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  ++  +G  +W+t++ + g+ R +k+c++rw +yl
   Csa12g026600.1 12 KGLWSPEEDEKLRSCILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 59
                     678*******************************************97 PP
2Myb_DNA-binding44.63.4e-1469110548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++eE+e ++  +  lG++ W+ Ia+ ++ gRt++++k++w+++l
   Csa12g026600.1  69 SAEEEETILAFHSSLGNK-WSQIAKFLP-GRTDNEIKNYWHSHL 110
                      89****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.769759IPR017930Myb domain
SuperFamilySSF466896.74E-2711106IPR009057Homeodomain-like
SMARTSM007178.4E-101161IPR001005SANT/Myb domain
PfamPF002492.9E-121259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-201366IPR009057Homeodomain-like
CDDcd001672.20E-71559No hitNo description
PROSITE profilePS5129421.59560114IPR017930Myb domain
SMARTSM007171.6E-1264112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2367113IPR009057Homeodomain-like
CDDcd001672.96E-969110No hitNo description
PfamPF002492.1E-1269110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGKTKSGEKQ RKGLWSPEED EKLRSCILSH GHSCWTTVPI KAGLQRNGKS CRLRWINYLR  60
PGLKREMISA EEEETILAFH SSLGNKWSQI AKFLPGRTDN EIKNYWHSHL KKRWLKSQNL  120
QHPKYISSSS SPSSSSLVSC GKRNPETLIS SHVINFQRLL ENKTSSPSQE SNVNNNHQCS  180
SAPELPRLFF NEWLSSSDPH IDDSSVFTDS KHNQAPNVEN NVSDYEETSD VDRFHYNEMM  240
INNNNWTLND VVFGSKFQKH ESQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g026600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196090.0AY519609.1 Arabidopsis thaliana MYB transcription factor (At4g25560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089318.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-155LAF1_ARATH; Transcription factor LAF1
TrEMBLR0FAN01e-164R0FAN0_9BRAS; Uncharacterized protein
STRINGXP_010438863.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-157myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]