PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g023460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 26433.3 Da PI: 9.6365 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.9 | 8.7e-32 | 5 | 78 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Csa12g023460.1 5 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITS-DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 78 579**********************************9999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.444 | 1 | 101 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-42 | 3 | 101 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-15 | 8 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
KALFGEKEWY FFSPRDRKYP NGSRPNRVAG SGYWKATGTD KIITSDGRRV GIKKALVFYA 60 GKAPKGTKTN WIMHEYRLIE HSRSHGSSKL DDWVLCRIYK KTSGSQRQAV AATTPVQACR 120 EEHSTNGSSS SSSSQLDDVL DSFPEIKDQS FHLPRMNSLR TLLNGNFDWA SLAGLNPIPE 180 LAPTNGLPSY GGYDSFRAAE GEAESGLRNS HVDNSGGLTQ SFGYSSSGFG VSGQTFEFRQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-66 | 1 | 107 | 68 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g023460.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF083738 | 0.0 | AF083738.1 Arabidopsis thaliana clone sps433 unknown mRNA. | |||
GenBank | AY087772 | 0.0 | AY087772.1 Arabidopsis thaliana clone 38344 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448140.1 | 1e-177 | PREDICTED: NAC domain-containing protein 72 | ||||
Swissprot | Q93VY3 | 1e-159 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A0A1EIC1 | 1e-157 | A0A0A1EIC1_OLIPU; NAC026 | ||||
STRING | XP_010448140.1 | 1e-177 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-149 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|