PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g022440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 400aa    MW: 45633.9 Da    PI: 4.7429
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g022440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18143193256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g+
  Csa12g022440.1 143 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 193
                     59****999.**********954...4**************************97 PP

2AP222.72.4e-072722963256
             AP2  32 slgkfgtaeeAakaaiaarkklege 56 
                     +lg+f+taeeAa a+++ + kl+g+
  Csa12g022440.1 272 WLGTFDTAEEAAMAYDRQAFKLRGH 296
                     9**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.49E-33142202No hitNo description
PROSITE profilePS5103223.67143200IPR001471AP2/ERF domain
SMARTSM003806.2E-38143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31143201IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23143201IPR016177DNA-binding domain
PfamPF008472.5E-13144193IPR001471AP2/ERF domain
PRINTSPR003674.5E-11144155IPR001471AP2/ERF domain
PRINTSPR003674.5E-11166182IPR001471AP2/ERF domain
PROSITE profilePS5103212.721235303IPR001471AP2/ERF domain
SMARTSM003802.3E-10260309IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-11268304IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-14271304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKSIDHS LGEASSTSPR SMKKMKSPPN RPKPYLQSSS SPYSLGAFPF  60
YLDPTMQNQQ HQFGSYVPVE QQYDPTMQSQ KQMISFSPQQ QQQQYQQQQY LARYWRDTLN  120
LSPRGRMMMM NQESVQPSSA TKLYRGVRQR QWGKWVAEIR KPRSRARLWL GTFDTAEEAA  180
MAYDRQAFKL RGHNATLNFP EHFVNMENEL HDSNSSPHQK QDETPQPSEV NLESKEVAVA  240
DNEREEGMAE AWYNAVTSGW GPESALWDDL XWLGTFDTAE EAAMAYDRQA FKLRGHNATL  300
NFPEHFVNME NEVHDSNSSP HQKQDETPQP SEVNLESKEV AVADNEREEG MAEAWYNAVT  360
SGWGPESALW DDLDSSHQFS ESSSSSSSSS LSCPMRPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20142200160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g022440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448023.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like isoform X1
RefseqXP_010448025.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like isoform X3
SwissprotQ9M0J31e-154ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLR0GTC61e-157R0GTC6_9BRAS; Uncharacterized protein
STRINGXP_010448023.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-144ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]