PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g021980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 40601.5 Da PI: 5.9516 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.8 | 5.3e-50 | 10 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhP+deelv++yL++k+++k+ e + e+d++ +ePw+Lp +k + kewyfFs rd+kyatg r+nrat Csa12g021980.1 10 LPPGFRFHPSDEELVCHYLCNKIRAKSdqgdvedD---EvdealkdatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATI 101 79**********************99977665551...1555666653599*************87788999*********************** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 sgyWkatgkd++v++ +++lvg++ktLvfy++rap+g kt+W+mhe+rle Csa12g021980.1 102 SGYWKATGKDRTVMDPrTRQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152 ***************967778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-56 | 8 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.625 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-26 | 11 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDQGD VEDDEVDEAL KDATDLVEID 60 LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTR 120 QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNIPPKE DWVLCRVFNK GRDSSLQDNN 180 YNNDHQTQRL EIIDAPNLNY SRNYNNQLPP LLSSPPRHQQ QEKMKIQVCD QWEQLMKQPS 240 RTTEHPYHQH CLHQTVACGW EQMIIGSLSS SSSHGPGHES LINLLYVDNN STVNITDDDH 300 QNYEKILLSP DMTSLEHDKT CMGSSSDGGM VSDLHMECGG LSFETDDLLP FH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-45 | 10 | 170 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g021980.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002462 | 0.0 | BT002462.1 Arabidopsis thaliana NAM / CUC2 -like protein (At4g28530) mRNA, complete cds. | |||
GenBank | BT008741 | 0.0 | BT008741.1 Arabidopsis thaliana At4g28530 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447967.2 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 4e-58 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | R0F607 | 0.0 | R0F607_9BRAS; Uncharacterized protein | ||||
STRING | XP_010433206.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 0.0 | NAC domain containing protein 74 |