PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g020370.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 409aa MW: 44780.6 Da PI: 6.5981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g020370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00054	269	304	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq Csa12g020370.1 269 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 304 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-10	264	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-5	264	308	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-7	269	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMNPN NNYLRPRMMP 60 TLLPHFLPSP ATSSSSSSST SLPNNPNISS WLESNDLPPE SWSLSQLLLG GLMMGEEERL 120 EMMNHHNHHD EQQHHSFQGK MRLENWEEQV LSHQQASMEA VDIKQESNIN NNNGYVISSP 180 NSPPNKSCVT TTTTSLNSND DNNNNNNNNN NMLDFSSNHN GLHLSEGRHI PPDRASECNS 240 VDIGGSTNKK PRLQPSPSSQ STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI 300 RFLQSQIEAL SHPYFGTTAS GNMRHQQHLQ GDRSCIFPED PGQLVNDQCM KRIGASSSST 360 DNQNANEEPK KDLRSRGLCL VPISCTLQVG SDNGADYWAP ALGSAGFH*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMNPN NNYLRPRMMP  60
TLLPHFLPSP ATSSSSSSST SLPNNPNISS WLESNDLPPE SWSLSQLLLG GLMMGEEERL  120
EMMNHHNHHD EQQHHSFQGK MRLENWEEQV LSHQQASMEA VDIKQESNIN NNNGYVISSP  180
NSPPNKSCVT TTTTSLNSND DNNNNNNNNN NMLDFSSNHN GLHLSEGRHI PPDRASECNS  240
VDIGGSTNKK PRLQPSPSSQ STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI  300
RFLQSQIEAL SHPYFGTTAS GNMRHQQHLQ GDRSCIFPED PGQLVNDQCM KRIGASSSST  360
DNQNANEEPK KDLRSRGLCL VPISCTLQVG SDNGADYWAP ALGSAGFH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g020370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010447890.1	0.0	PREDICTED: transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A178V0M1	0.0	A0A178V0M1_ARATH; Uncharacterized protein
STRING	XP_010447890.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]