PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g019250.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 497aa MW: 54817.5 Da PI: 7.1743

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g019250.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.1	3e-35	48	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+Ptd+el+ e+L++kv +k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Csa12g019250.1 48 LPAGVKFDPTDQELI-EHLEAKVLAKDfkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecds 137 799**********.99****95554442...143333666646******.555666799**************87999999 PP NAM 78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Csa12g019250.1 138 nlqgsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196 999987666788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-38	40	215	IPR003441	NAC domain
PROSITE profile	PS51005	33.01	48	215	IPR003441	NAC domain
Pfam	PF02365	8.4E-16	49	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MNKSNPAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPQDWVGLPA GVKFDPTDQE 60 LIEHLEAKVL AKDFKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA 120 YTTGTRKRRK IQTECDSNLQ GSSSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK 180 NRKPEKTNWV MHQYHLGTHE EEKEGELVVS KIFYQTQPRQ CNWSSSTSSL NAIGGGGGEA 240 SSGGEYHMRR DSGTTSGGSC SSSREIINVN PPNRSDEVGG IGGGVMAVAA AAVAAGLPSY 300 AMDQLSFVPF MKSFDEVARR ETPQTGQATC EGVMAEQHRH RHHRHQASAS TSHHMANDHH 360 HHHQQHQQQR HHAFNISQPT HPISTIISPS TSLHHASINI LDDNPYHVHR ILLPNENYQT 420 QQQQRQEGEE EHNDGKMGGR SASGLEELIM GCTSSTTHHD VKDGSSSLGN QQEAEWLKYS 480 TFWSAPDSSD NQDHHG*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MNKSNPAGSV TGSDIIDAKI EEHQLCGSKK CPSCGHKLEG KPQDWVGLPA GVKFDPTDQE  60
LIEHLEAKVL AKDFKSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS RHFFHRPSKA  120
YTTGTRKRRK IQTECDSNLQ GSSSSGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK  180
NRKPEKTNWV MHQYHLGTHE EEKEGELVVS KIFYQTQPRQ CNWSSSTSSL NAIGGGGGEA  240
SSGGEYHMRR DSGTTSGGSC SSSREIINVN PPNRSDEVGG IGGGVMAVAA AAVAAGLPSY  300
AMDQLSFVPF MKSFDEVARR ETPQTGQATC EGVMAEQHRH RHHRHQASAS TSHHMANDHH  360
HHHQQHQQQR HHAFNISQPT HPISTIISPS TSLHHASINI LDDNPYHVHR ILLPNENYQT  420
QQQQRQEGEE EHNDGKMGGR SASGLEELIM GCTSSTTHHD VKDGSSSLGN QQEAEWLKYS  480
TFWSAPDSSD NQDHHG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g019250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254602	0.0	AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010447876.1	0.0	PREDICTED: uncharacterized protein LOC104730414 isoform X1
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1P8B8V6	0.0	A0A1P8B8V6_ARATH; NAC domain containing protein 75
STRING	XP_010447876.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6635	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]