PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g017310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 301aa    MW: 34922.5 Da    PI: 5.3373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g017310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1199141754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+++N++++ Lr+++P+      +Kl+Ka++ +  ++Y+++L
  Csa12g017310.1  99 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASVIKDSIDYMQEL 141
                     57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.04492141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-995141No hitNo description
SuperFamilySSF474592.62E-1696163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1698162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-1398147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-999141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
AHSCIDSTLN RKTQHQKRKK EQTRSKKQNL PFQERIVFFC PKMDDLEQEY KNYWETTMFF  60
QNQELEFDSW PMEEAFSGSG ESSSPDGAAT SPASSKNVVS ERNRRQKLNQ RLFALRSVVP  120
NITKLDKASV IKDSIDYMQE LIEQEKRLEA EIRELESRSM QLENPMKDYD CVNNFSENQL  180
QNFPDDINVM RSKKFKQIDY STRVLQYSPI EVLELKVTWM GEKTVVVCIT CSKKRETMLQ  240
LCKVLESLNL NILTTNFSSF SSRLSTTLFL QADEEESSAV EAKIQMAIAA YNDPNYLINF  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g017310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447790.10.0PREDICTED: transcription factor bHLH27-like
SwissprotQ700E31e-144BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A1J3EJ611e-169A0A1J3EJ61_NOCCA; Transcription factor bHLH27 (Fragment)
TrEMBLR0F7Y51e-170R0F7Y5_9BRAS; Uncharacterized protein
STRINGXP_010447790.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-136bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]