PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g017300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-PHD | ||||||||
Protein Properties | Length: 923aa MW: 104017 Da PI: 4.6861 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 4.1e-10 | 544 | 588 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 k +e L +F++n ps++ r +L+k+l+L+ ++V+ WF+N R+ Csa12g017300.1 544 KAAVEKLRIAFAENELPSKDVRDRLSKELSLDPEKVSKWFKNTRY 588 567899999**********************************97 PP | |||||||
2 | PHD | 41.1 | 4e-14 | 274 | 329 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ + +++++lCd +C+++fH+kCl+++le+e++p g w+C+ C++k Csa12g017300.1 274 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKLCDCK 329 6999***55455********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 3.5E-14 | 266 | 331 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 4.1E-12 | 270 | 329 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.994 | 272 | 329 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 2.8E-11 | 274 | 329 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 4.95E-31 | 274 | 326 | No hit | No description |
SMART | SM00249 | 7.9E-10 | 274 | 327 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 275 | 326 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 8.8E-12 | 523 | 587 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.99E-10 | 532 | 597 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.827 | 533 | 593 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-11 | 535 | 597 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.50E-9 | 536 | 597 | No hit | No description |
Pfam | PF00046 | 1.5E-7 | 544 | 588 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 923 aa Download sequence Send to blast |
MKINKSCCEQ ISITIAKVKY QRRGPESDVN TRPLKAPFQL AAGDSILKII VSPHYPCRKD 60 LHFGFFLPQF PHTHLLTLFQ ESETKGRIRR ETEKACVSVE RIGSTLLSSL AKKGKETSNK 120 RNPKPNKRKT EEEICSKSRN KKCTRGRVHC EEENEEEEEE KGKRTRKRKS KRQQKDNKVE 180 VDDSLRLQRR TRYLLIKMKM QQNLIDAYAT EGWKGQSREK IRPDKELERA RKEILNCKLG 240 LRDAIRQLDL LSSVGSMEDK VIALDGSIHH DHIFCAECNS REAFPDNDII LCDGTCNRAF 300 HQKCLDPPLE TESIPPGDQG WFCKLCDCKM EIIDTMNAQI GTHFPADSNW QDIFKEEASL 360 PIGSEATVNN EADWPSDDSK DDDYDPEMRE KGGGSSSNVS GGGGGGGDND GESSSTSLSS 420 DGVALSTGSW EGHGFNNMVE QCETSNEEAV CGPRQRRTVD YTKLYYEMFG KDAVLQEQGS 480 EDEDWGPNDR RKRRKESDVT SELVNMCESS KKDQDAVQIP EQRKRDSVSV ENKGGRRPMF 540 RLPKAAVEKL RIAFAENELP SKDVRDRLSK ELSLDPEKVS KWFKNTRYMA LRNRKMESEK 600 QPEHSKTVSG RDSEPEAVMK NNTDTKQAQN TLDETVPPGF NDSATNQKTI SPCNNNQEVT 660 EDLKTVSGGD SGDSGPEEVM ENDTNEVQDS LDETFPPGFN DLATNQKIYS PCNNSPEIPE 720 DLKTVSGGDS EPEAVMENDT NEVQDSLDET FPPGFNDLAA NQNILSPCNN NQEETQQANV 780 SFPAPTDEIQ QYLEQNDSSF ALVPHEELSS EMSLKTAVEE KETESKTTEE PHDEELSSGM 840 SLKTAEEEEE TESKITEEEE YEAVMEMLCR TKNKLLDVSQ RLERFKTPKG RKKLGRCSSS 900 LSEEDSVVYV PIVEVMEKKE NN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 169 | TRKRKS |
2 | 490 | 495 | RKRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g017300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATHPRHA | 0.0 | L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447786.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 | ||||
Refseq | XP_019089785.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein-like isoform X2 | ||||
Swissprot | P48785 | 0.0 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | R0F3V5 | 0.0 | R0F3V5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010447789.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8699 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 0.0 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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