PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g016130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 312aa    MW: 33168.1 Da    PI: 7.0053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g016130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11139184555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Csa12g016130.1 139 HSIAERLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 184
                     99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-13132188No hitNo description
PROSITE profilePS5088817.301134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9139184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNSSSLLTPS SSSSPHLQSP ATFDHDDFLH HIFSSTPWPS SVLDEAPPPT PNCTAVPGFH  60
HHDVDSRNQI TMIPLSHNHP NDALFNGFST GSLPFHLPQG SGGQTQSQAT ASTTTGGTTG  120
PTQTKPKVRA RRGQATDPHS IAERLRRERI AERMKSLQEL VPNGNKTDKA SMLDEIIDYV  180
KFLQLQVKVL SMSRLGGAAS VSSQISEDAS GSHENTSSSG ENQTAKMTEH QVAKLMEEDM  240
GSAMQYLQGK GLCLMPISLA TTISTATCPS RNPFVKDTVV PLSPNLSTTT IVNGSGSSLV  300
TVKDAPTVSK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g016130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886010.0AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447636.10.0PREDICTED: transcription factor bHLH69-like
SwissprotQ8S3D50.0BH069_ARATH; Transcription factor bHLH69
TrEMBLA0A384LMW20.0A0A384LMW2_ARATH; LRL2
TrEMBLC0SVK80.0C0SVK8_ARATH; Uncharacterized protein At4g30980 (Fragment)
STRINGXP_010447636.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-165LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]