PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g014470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 554aa MW: 62595.7 Da PI: 8.3713 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.1 | 4.3e-15 | 25 | 100 | 15 | 95 |
-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l +p +f+ +h g + e+ t++l++ s Wevk+ +gr + t+GWkeFv a++ + gD++vF+++g +f ++v+ Csa12g014470.1 25 YLNIPVTFFLKHlqGRN--EHETVKLRTeVSDTIWEVKI----EDGRRLTTDGWKEFVTAHDFRIGDVIVFRHEG--DFVFHVT 100 489*********85444..5569999996777*******....44445789*********************766..5644665 PP | |||||||
2 | B3 | 53.9 | 3.4e-17 | 158 | 249 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ ++l+++ +++p +f++++g k+++ +++l +e grsW++ l ++k++ +++l+ GW++F++ang++ g +Fkl++ +++++v++++++ Csa12g014470.1 158 NVSVSNLQEDKVYVPLSFVRSNGWTKACG-KVVLLNEMGRSWNLSLDHDKSGIKTYLRHGWRSFCNANGMNRGGY-TFKLVK-NSGTPVIRLCQA 249 56678889999***********9999998.****************999*9999*******************96.***998.77779**99975 PP | |||||||
3 | B3 | 74.4 | 1.3e-23 | 268 | 359 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++++++ l+lpk f++++g++k + +++l++e gr+W++ l++ k+ +++v+++GW++F++ ngLk++D++ Fkl++ +++++v+ ++ Csa12g014470.1 268 LTPSSFNHDALYLPKGFVSSNGLDKDCCDEMVLKNEYGRTWNLVLRHHKSNNTVVMSRGWRSFCQGNGLKARDSFRFKLVR-TGAKPVLCLCP 359 4778888999********************************************************************998.88889999886 PP | |||||||
4 | B3 | 45.3 | 1.5e-14 | 453 | 549 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f++ ++++++ +++ l+lp +f++ +g+kk++ ++tl ++g v+l + gr l++ Wk+F++ + +k g+++v++l++++++++ +k Csa12g014470.1 453 FLTLTISPYSYRTNKLRLPLHFTRVNGIKKPG--KITLLGQDGVHRMVRLVKDHENGRLRLGRDWKGFCELHSVKIGESFVLELIWKKDASPALK 545 77888999******************999766..8***************99999999********************************9*999 PP EE-S CS B3 96 vfrk 99 ++ k Csa12g014470.1 546 FCTK 549 9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-20 | 8 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 8 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.899 | 11 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.08E-14 | 12 | 100 | No hit | No description |
SMART | SM01019 | 3.3E-17 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-10 | 26 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-18 | 148 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-17 | 150 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.17E-14 | 154 | 247 | No hit | No description |
PROSITE profile | PS50863 | 12.083 | 154 | 250 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-20 | 155 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-16 | 157 | 249 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 256 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-22 | 259 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.551 | 263 | 361 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.08E-20 | 263 | 359 | No hit | No description |
SMART | SM01019 | 1.9E-28 | 264 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-22 | 268 | 360 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-15 | 445 | 539 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-15 | 447 | 538 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-14 | 453 | 549 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-18 | 453 | 550 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.04E-13 | 453 | 538 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 453 | 550 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MADSGLQSPK NPHFFQALLP GFDSYLNIPV TFFLKHLQGR NEHETVKLRT EVSDTIWEVK 60 IEDGRRLTTD GWKEFVTAHD FRIGDVIVFR HEGDFVFHVT ALGLNCCEIE YTSSSHSIDD 120 DCDIHQDNIE IRPMKKRVKK NPRREDDSSS EHSCFVANVS VSNLQEDKVY VPLSFVRSNG 180 WTKACGKVVL LNEMGRSWNL SLDHDKSGIK TYLRHGWRSF CNANGMNRGG YTFKLVKNSG 240 TPVIRLCQAG CKPDAESSSN CSYFAGSLTP SSFNHDALYL PKGFVSSNGL DKDCCDEMVL 300 KNEYGRTWNL VLRHHKSNNT VVMSRGWRSF CQGNGLKARD SFRFKLVRTG AKPVLCLCPA 360 ETKRDTRVVE CSEGTDVDSL STDPSSGEES SETEESEVKK NTKHKGRDNI NFKEDSEVES 420 IEDKISLHEC SNIEKWKYCS RSGASSSSSQ SRFLTLTISP YSYRTNKLRL PLHFTRVNGI 480 KKPGKITLLG QDGVHRMVRL VKDHENGRLR LGRDWKGFCE LHSVKIGESF VLELIWKKDA 540 SPALKFCTKV NCV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g014470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447536.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Refseq | XP_019089532.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
TrEMBL | R0F4H1 | 0.0 | R0F4H1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010447536.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-131 | B3 family protein |