PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g014300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 35390.2 Da PI: 10.3117 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.4e-31 | 243 | 300 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h+ Csa12g014300.1 243 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPAMLIVTYEGEHRHN 300 9************************8766****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.6E-16 | 191 | 239 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-32 | 229 | 301 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.24 | 236 | 302 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 239 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 241 | 301 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-27 | 243 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MAVDLMRFPK IDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQRNVDCSEI TDFTVSKFKT 60 VISLLNRTGH ARFRRGPVRS SAVVSPPPPP PLPQIVKPAP IVTPQPSSFV HSNQPSVTLD 120 FSKPTIFGSK SKSSELEFSK ENFSVSLNSS YMSSAITGDG SVSNGKIFLA SAPSQPVTSS 180 GKPPLASHPY RKRCLEHEHS ESFSGRISGS GHGKCHCKKR KNKMKRTVRV PAISAKIADI 240 PPDEYSWRKY GQKPIKGSPH PRGYYKCSTF RGCPARKHVE RALDDPAMLI VTYEGEHRHN 300 QSAAMHENIS SSGVNDLVFA SA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 229 | 300 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g014300.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY514044 | 0.0 | AY514044.1 Capsella rubella WRKY transcription factor 11 (WRKY11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447511.1 | 0.0 | PREDICTED: probable WRKY transcription factor 11 isoform X2 | ||||
Swissprot | Q9SV15 | 0.0 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | R0H0L2 | 0.0 | R0H0L2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010447510.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31550.2 | 1e-168 | WRKY DNA-binding protein 11 |