PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g013230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 968aa MW: 107237 Da PI: 5.5609 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 35 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Csa12g013230.1 35 KGQWTPEEDDVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.1e-19 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l Csa12g013230.1 87 KGPWSKEEDNTIIALVEKHGPKKWSTISQHLP-GRIGKQCRERWHNHL 133 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.9 | 8.3e-17 | 139 | 181 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ +G++ W+ ++ ++ gR+++++k++w+ Csa12g013230.1 139 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.052 | 30 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 35 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.66E-15 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.75E-13 | 38 | 81 | No hit | No description |
PROSITE profile | PS51294 | 32.649 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-31 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-18 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-18 | 87 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.13E-16 | 89 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 94 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 138 | 186 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.286 | 138 | 188 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-14 | 139 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 141 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.57E-11 | 141 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 968 aa Download sequence Send to blast |
MKREMKAPST PQESFQADLK GKHGRTSGPA RRSTKGQWTP EEDDVLCKAV ERFQGKNWKK 60 IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIIA LVEKHGPKKW STISQHLPGR 120 IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW 180 NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIAPSPSWM HSSGDEGNSR PVDAEESECS 240 QASTVFSQST NDFQDEVKPG NEEFYMPEFH SGAEQKISND AAEPYYPPFE DAKIVVPEIS 300 CEAECSKKFE NLNCSHKVRT TTDTEDQLKG VSNDAKQDLD LDLLTHNMNN DGKNQALQQA 360 FQSSVRLSDQ PALPNSDTDP EAQTLITDEE CCRVLFPDTM KDSCTSSGEQ GRNMIGPQKG 420 KGSLCSQSVE THVHETGKLP ALSWHPSSSE GLAVHNCVPL LDTGLERKTD TNDGFIDTDG 480 HITSHGNDDN GGIPEQQGLS YIPKDSLKLV PLNSFSSPSR VNKIYFPIDD KPDEKDKGAL 540 CYEPPRFPSA DIPFFSCDLV PSNSDLRQEY SPFGIRQLMI SSMNCTTPLR LWDSPCHDRS 600 PDVMLNDAGK SSSNAPSILQ KRHRDLLSPV LDRRKDKKHR RASTSSLAKD FSCLDVMLDE 660 GDDCMSSRPS ESPENNYRCA SRSEAKDIRY AASGQSDQEM IPRDEEPKET LKSSGVTSMQ 720 NEKGCNEGGA SAKNDQETSG SLVEIRLSSP GMIGCRSDSK VNTSAKDLSN QHICSLGDIP 780 TDEIPSEPPC TVDSSPLSAF DKINSAGTSF DIENFSIFDG TPFRKLLDTP SPWKSPLLFG 840 SFLQSPKLPP EITFEDIGCF MSPGERSYDA IGLMKHLSEH SATAYADALE VLGNDTPETI 900 LKKRQLNKSI QGKENHHLPH DQLGNRSQVE RRTLDFSDCG TPGKTMVSAA SPGGYSSPSS 960 YLLKSCR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-66 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-66 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g013230.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF151646 | 0.0 | AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds. | |||
GenBank | AF176005 | 0.0 | AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds. | |||
GenBank | AF189784 | 0.0 | AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447351.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_010447352.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_010447353.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Refseq | XP_019088856.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | R0GUI6 | 0.0 | R0GUI6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010447351.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
---|---|---|---|
|