PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g013230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 968aa    MW: 107237 Da    PI: 5.5609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g013230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-173581148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd+ l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   Csa12g013230.1 35 KGQWTPEEDDVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81
                     799****************************9.************986 PP

2Myb_DNA-binding61.22.1e-1987133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd  ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l
   Csa12g013230.1  87 KGPWSKEEDNTIIALVEKHGPKKWSTISQHLP-GRIGKQCRERWHNHL 133
                      79******************************.*************97 PP

3Myb_DNA-binding52.98.3e-17139181145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE++ l++a++ +G++ W+  ++ ++ gR+++++k++w+
   Csa12g013230.1 139 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181
                      689*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0523081IPR017930Myb domain
SMARTSM007172.4E-143483IPR001005SANT/Myb domain
PfamPF002497.1E-153581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-213693IPR009057Homeodomain-like
SuperFamilySSF466892.66E-153691IPR009057Homeodomain-like
CDDcd001674.75E-133881No hitNo description
PROSITE profilePS5129432.64982137IPR017930Myb domain
SuperFamilySSF466895.99E-3184180IPR009057Homeodomain-like
SMARTSM007172.6E-1886135IPR001005SANT/Myb domain
PfamPF002494.1E-1887133IPR001005SANT/Myb domain
CDDcd001674.13E-1689133No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2794140IPR009057Homeodomain-like
SMARTSM007176.2E-15138186IPR001005SANT/Myb domain
PROSITE profilePS5129418.286138188IPR017930Myb domain
PfamPF002491.2E-14139182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-21141188IPR009057Homeodomain-like
CDDcd001672.57E-11141181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MKREMKAPST PQESFQADLK GKHGRTSGPA RRSTKGQWTP EEDDVLCKAV ERFQGKNWKK  60
IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIIA LVEKHGPKKW STISQHLPGR  120
IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW  180
NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIAPSPSWM HSSGDEGNSR PVDAEESECS  240
QASTVFSQST NDFQDEVKPG NEEFYMPEFH SGAEQKISND AAEPYYPPFE DAKIVVPEIS  300
CEAECSKKFE NLNCSHKVRT TTDTEDQLKG VSNDAKQDLD LDLLTHNMNN DGKNQALQQA  360
FQSSVRLSDQ PALPNSDTDP EAQTLITDEE CCRVLFPDTM KDSCTSSGEQ GRNMIGPQKG  420
KGSLCSQSVE THVHETGKLP ALSWHPSSSE GLAVHNCVPL LDTGLERKTD TNDGFIDTDG  480
HITSHGNDDN GGIPEQQGLS YIPKDSLKLV PLNSFSSPSR VNKIYFPIDD KPDEKDKGAL  540
CYEPPRFPSA DIPFFSCDLV PSNSDLRQEY SPFGIRQLMI SSMNCTTPLR LWDSPCHDRS  600
PDVMLNDAGK SSSNAPSILQ KRHRDLLSPV LDRRKDKKHR RASTSSLAKD FSCLDVMLDE  660
GDDCMSSRPS ESPENNYRCA SRSEAKDIRY AASGQSDQEM IPRDEEPKET LKSSGVTSMQ  720
NEKGCNEGGA SAKNDQETSG SLVEIRLSSP GMIGCRSDSK VNTSAKDLSN QHICSLGDIP  780
TDEIPSEPPC TVDSSPLSAF DKINSAGTSF DIENFSIFDG TPFRKLLDTP SPWKSPLLFG  840
SFLQSPKLPP EITFEDIGCF MSPGERSYDA IGLMKHLSEH SATAYADALE VLGNDTPETI  900
LKKRQLNKSI QGKENHHLPH DQLGNRSQVE RRTLDFSDCG TPGKTMVSAA SPGGYSSPSS  960
YLLKSCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-66351886159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-66351886159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g013230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1516460.0AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds.
GenBankAF1760050.0AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds.
GenBankAF1897840.0AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447351.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_010447352.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_010447353.10.0PREDICTED: myb-related protein 3R-1-like
RefseqXP_019088856.10.0PREDICTED: myb-related protein 3R-1-like
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLR0GUI60.0R0GUI6_9BRAS; Uncharacterized protein
STRINGXP_010447351.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]