PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g012890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 476aa    MW: 54025.8 Da    PI: 6.6411
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g012890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-083934311854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  Csa12g012890.1 393 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 431
                     5887779******************************88 PP
2BELL90.81.4e-29268338172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r++l+++k++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  Csa12g012890.1 268 QRRALEAQKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERICKKI 338
                     6899*****************************************.************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-58198336IPR006563POX domain
PfamPF075262.0E-27204334IPR006563POX domain
PROSITE profilePS5007110.981372435IPR001356Homeobox domain
CDDcd000865.70E-10375436No hitNo description
SMARTSM003897.1E-5375439IPR001356Homeobox domain
SuperFamilySSF466895.99E-15376444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-25378441IPR009057Homeodomain-like
PfamPF059201.6E-14392431IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDNDNAFSSL NNVMANQNPL LMDFIPSRED STSFSSMLPW NSIRSDPLQM GGFDIFNSML  60
TNKYLSSSSS RSFDVQENRN VESFEVMAPP PPPHPQLHHL DHLRPYDDAS NNMWGFEGNS  120
EFQTYSGVVG PSEPMMSTFG EDDFPFLISN KRNSELSLSL ATDVSDECSE ISLCAATRLA  180
SEQASCSSKD ISSNVVTQSF SQLIFGSKYL HSVQEILSHF ATYSLDYSSR GTESGAAHSA  240
FTSRFENLTE FLDDDSNNSE AGLGSTLQRR ALEAQKTHLL DLLQMVDDRY SHCVDEIHTV  300
VSAFHAATEL DPQLHTRFAL QTISFLYKNL RERICKKILA MGSVLERGKD KSQENSIFHQ  360
HCLLQQLKRK NHQIWRPQRG LPEKSVSVLR TWMFQNFLHP YPKDSEKHLL AIRSGLTRSQ  420
VSNWFINARV RLWKPMIEEM YAEMNKRKLN NSHLQPNGAT LRMPKSVMMS QAMHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-14381439563Homeobox protein Meis2
3k2a_B8e-14381439563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g012890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447305.10.0PREDICTED: homeobox protein ATH1
RefseqXP_010447306.10.0PREDICTED: homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLD7M9B90.0D7M9B9_ARALL; Uncharacterized protein
STRINGXP_010447304.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]