PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g008900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 284aa MW: 32024.8 Da PI: 6.707 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.2 | 2.3e-18 | 191 | 224 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ + Csa12g008900.1 191 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 224 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.9E-84 | 7 | 281 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.5E-15 | 185 | 235 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 188 | 248 | No hit | No description |
PROSITE profile | PS50114 | 11.952 | 189 | 221 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.9E-14 | 189 | 222 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.62E-15 | 190 | 247 | No hit | No description |
Pfam | PF00320 | 5.4E-16 | 191 | 225 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 191 | 216 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MELWTEARAL KASLRGESTT SSLKHHQVIV SEDLSRTSSL SEDFAVECFL DFSEGQQQLK 60 EEEEELVSLS SSQEEQEQEQ DCIFSSQPCL FDQLPSLPDE DVEELEWVSR VVDDCSSPEV 120 SLLFTQTHKT KPNFSSRIPV KPRTKRSRNS LTGGRVWPLV SANHQQHAVA ATEKWRKKKQ 180 ETAAVVFQRR CSHCGTNNTP QWRTGPVGPK TLCNACGVRF KSGRLCPEYR PADSPTFSNE 240 IHSNLHRKVL ELRKSKELGE ETGEASTKKS DQVKFGSKWL DKT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g008900.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK317163 | 0.0 | AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07. | |||
GenBank | Y13650 | 0.0 | Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447043.1 | 0.0 | PREDICTED: GATA transcription factor 3 | ||||
Swissprot | Q8L4M6 | 1e-162 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | D7MDJ6 | 1e-166 | D7MDJ6_ARALL; GATA transcription factor | ||||
STRING | XP_010447043.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5739 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34680.2 | 1e-158 | GATA transcription factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|