PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g008900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 284aa    MW: 32024.8 Da    PI: 6.707
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g008900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18191224134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  Csa12g008900.1 191 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 224
                     *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-847281IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-15185235IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15188248No hitNo description
PROSITE profilePS5011411.952189221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.9E-14189222IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.62E-15190247No hitNo description
PfamPF003205.4E-16191225IPR000679Zinc finger, GATA-type
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MELWTEARAL KASLRGESTT SSLKHHQVIV SEDLSRTSSL SEDFAVECFL DFSEGQQQLK  60
EEEEELVSLS SSQEEQEQEQ DCIFSSQPCL FDQLPSLPDE DVEELEWVSR VVDDCSSPEV  120
SLLFTQTHKT KPNFSSRIPV KPRTKRSRNS LTGGRVWPLV SANHQQHAVA ATEKWRKKKQ  180
ETAAVVFQRR CSHCGTNNTP QWRTGPVGPK TLCNACGVRF KSGRLCPEYR PADSPTFSNE  240
IHSNLHRKVL ELRKSKELGE ETGEASTKKS DQVKFGSKWL DKT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g008900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171630.0AK317163.1 Arabidopsis thaliana AT4G34680 mRNA, complete cds, clone: RAFL21-96-H07.
GenBankY136500.0Y13650.1 Arabidopsis thaliana mRNA for GATA transcription factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447043.10.0PREDICTED: GATA transcription factor 3
SwissprotQ8L4M61e-162GATA3_ARATH; GATA transcription factor 3
TrEMBLD7MDJ61e-166D7MDJ6_ARALL; GATA transcription factor
STRINGXP_010447043.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-158GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]