PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g008230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Nin-like

Protein Properties

Length: 972aa MW: 108183 Da PI: 6.374

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g008230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	649	699	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Csa12g008230.1 649 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 699 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	638	719	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	652	699	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-24	863	956	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.0E-25	868	952	No hit	No description
PROSITE profile	PS51745	29.794	870	953	IPR000270	PB1 domain
SMART	SM00666	1.8E-28	870	953	IPR000270	PB1 domain
Pfam	PF00564	3.3E-18	872	952	IPR000270	PB1 domain
CDD	cd06407	2.17E-41	872	952	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MEGGGGGGGD GSFLPNSSFG VFSETAMDMD FMEELFYDGC WLETTDGKSL KQTLGQQVSD 60 STTMNDNNNN NSFLYGYQFA ENPSQDHISN EETGRKFPPI TPGFLKIEDL SNQPLNQVPF 120 DQSAAMSSAQ AEKFLLEETE GGRRWWIAPR TSQGPSSSVK DRLVQAIKGL MQDKDFLIQI 180 WVPIQQEGKN FLTTLEQPHF FNPKYLSLKR YRDVSVAYNF PAHEDSTESV GLPGRVFLGK 240 LPEWTPDVRF FRSEEYPRIK EAEKCDVRGS LALPVFERGS GTCLGVVEIV TTTQKMNYRP 300 ELDNICKALE SVNLRSSRNL KSPSREFLQV YNEFYYAALP EVSEFLTWVC RLYDLPLALT 360 WAPCARQGKV GSRHSDENFS ECVSTVDDAC IVPDHQSRNF LEACSEHHLL QGEGIVGKAF 420 KATKLFFVPE VITFSKTNYP LAHHAKISGL HAALAVPLKS KFNGSVEFVL EFFFPKTCLD 480 TEAQQDMLKS LSVTVQQDFR SLNLVIDKEL ELEVVFPVRE EVVFAKTPLI NAQTGENMKP 540 LPLEEISQED SSWISHMIKA NEKGKGVSLS WEYQKEEPKE EFMLTSGWDN NQTGSGHSNF 600 LSEADQFQKV SNSGLRIDMD PSFESASFGV GQTLLGSRRP GEKRRTKTEK TIGLEVLRQY 660 FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI 720 QLDSFYTSFP ELSSPHMSGT ATSFKNTDQS RNLTAQTENG VSAQGTAAAA PKSPPSSSCS 780 HSSGSSTCCS TGANQSSNTG NTSVTTLMAE NASAILKRAR SEVRLHTMNH EETKSLSRTL 840 SHKTFSEHPL FENLPRLPES NRRNLKAEGA SKVKATFGEA KVRFTLLPTW GFRELQHEIA 900 RRFNIDNIAP FDLKYLDDDK EWVLLTCEAD LEECIDIYRS SQSRTIKISV HEASQNKLGG 960 SFGSIGLGPS L*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MEGGGGGGGD GSFLPNSSFG VFSETAMDMD FMEELFYDGC WLETTDGKSL KQTLGQQVSD  60
STTMNDNNNN NSFLYGYQFA ENPSQDHISN EETGRKFPPI TPGFLKIEDL SNQPLNQVPF  120
DQSAAMSSAQ AEKFLLEETE GGRRWWIAPR TSQGPSSSVK DRLVQAIKGL MQDKDFLIQI  180
WVPIQQEGKN FLTTLEQPHF FNPKYLSLKR YRDVSVAYNF PAHEDSTESV GLPGRVFLGK  240
LPEWTPDVRF FRSEEYPRIK EAEKCDVRGS LALPVFERGS GTCLGVVEIV TTTQKMNYRP  300
ELDNICKALE SVNLRSSRNL KSPSREFLQV YNEFYYAALP EVSEFLTWVC RLYDLPLALT  360
WAPCARQGKV GSRHSDENFS ECVSTVDDAC IVPDHQSRNF LEACSEHHLL QGEGIVGKAF  420
KATKLFFVPE VITFSKTNYP LAHHAKISGL HAALAVPLKS KFNGSVEFVL EFFFPKTCLD  480
TEAQQDMLKS LSVTVQQDFR SLNLVIDKEL ELEVVFPVRE EVVFAKTPLI NAQTGENMKP  540
LPLEEISQED SSWISHMIKA NEKGKGVSLS WEYQKEEPKE EFMLTSGWDN NQTGSGHSNF  600
LSEADQFQKV SNSGLRIDMD PSFESASFGV GQTLLGSRRP GEKRRTKTEK TIGLEVLRQY  660
FAGSLKDAAK SIGVCPTTLK RICRQHGITR WPSRKIKKVG HSLKKLQLVI DSVQGVQGSI  720
QLDSFYTSFP ELSSPHMSGT ATSFKNTDQS RNLTAQTENG VSAQGTAAAA PKSPPSSSCS  780
HSSGSSTCCS TGANQSSNTG NTSVTTLMAE NASAILKRAR SEVRLHTMNH EETKSLSRTL  840
SHKTFSEHPL FENLPRLPES NRRNLKAEGA SKVKATFGEA KVRFTLLPTW GFRELQHEIA  900
RRFNIDNIAP FDLKYLDDDK EWVLLTCEAD LEECIDIYRS SQSRTIKISV HEASQNKLGG  960
SFGSIGLGPS L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g008230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446946.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_010446947.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_010446948.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_010446949.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_010446950.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	R0GGQ7	0.0	R0GGQ7_9BRAS; Uncharacterized protein
STRING	XP_010446946.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein