PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g007960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 343aa MW: 39209.7 Da PI: 9.0294 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.7 | 7.5e-26 | 212 | 260 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sl+dlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Csa12g007960.1 212 GLSLKDLSKYFGLTIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 260 589********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.019 | 195 | 280 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-21 | 213 | 260 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAHSLTSLAI FQSLIRKEAV RSLHVYGSVE IEREFLFESE SPYVEKEAKP LFLLEGSRRP 60 EISEGSVFGT WRCIFLFRFN HPLPRFPTLL CPSRNPKLED IPNLANDLKF ISGSQPKTPS 120 KVSDQEQCTS VGYCKSDQTK LLKLESEDDS VRDCEVDQPK PPRIVLKQDL NCLPDSESES 180 EESENEKTEH SESDENVKML MGKRTPSKIV AGLSLKDLSK YFGLTIVEAS RSLNVGLTVL 240 KKKCREFGIP RWPHRKIKSL DSLIHDLQRE AEREQENSEA AAMAVAKKQK KLETEKRNIV 300 ERPFMEIQKE TKRFRQINFK KRHRASRAKK NQESLVSNSS ST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g007960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 3e-71 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 3e-71 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 3e-71 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019089344.1 | 0.0 | PREDICTED: protein RKD5-like | ||||
Swissprot | O81791 | 1e-170 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | R0GJ89 | 0.0 | R0GJ89_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010451041.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-149 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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