PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g007500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 331aa MW: 36519 Da PI: 10.9403 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.2 | 1.5e-07 | 281 | 302 | 5 | 26 |
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r +r++kNRe+A rsR+RK++ Csa12g007500.1 281 RRHKRMIKNRESAARSRARKQE 302 699******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14707 | 3.52E-12 | 281 | 303 | No hit | No description |
SuperFamily | SSF57959 | 8.72E-6 | 281 | 307 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.8E-6 | 281 | 305 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 284 | 299 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MPLSLLLESL DPTHHSRNDR RKSRTSLSSL LTTLSHLFLS FSLYLRVGYK TIDTKTKAVL 60 FGSVLFSFPM LSSAKHQRNL RVSATNKNKA SSISPSSPSS SSSSSTSSSS PLPSQDSQGQ 120 KRSLITMEEV WKDINLASIH HINRHSQHPQ HNHEPRFRSH NHQNQNPNSI FQDFLNGPLN 180 QEPAPTSLAM GSASNGNSTT VTALCSSPFP PPATVLSLNS GAGFEFLDNQ DPLVVTPNSN 240 LHSHHNLSNI PSFNTPFEAL VTSTCFGKKR GQESNEGTGN RRHKRMIKNR ESAARSRARK 300 QECASLLLLT FFYSWISKGR KNVLLPSKCF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g007500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ177127 | 0.0 | GQ177127.1 Arabidopsis thaliana ecotype Mt-0 FD gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446860.1 | 0.0 | PREDICTED: protein FD | ||||
Swissprot | Q84JK2 | 1e-117 | FD_ARATH; Protein FD | ||||
TrEMBL | R0GMJ7 | 1e-133 | R0GMJ7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010446860.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-108 | bZIP family protein |