PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g004890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26918.4 Da PI: 9.269 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.8 | 2.2e-21 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ n qvtfskRr g++KKA+EL++LC+a++++i+fs+ gk++ + Csa12g004890.1 3 NENNLQVTFSKRRFGLFKKASELCTLCGAQILMIVFSPGGKVFSF 47 88999*************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.395 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-22 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-23 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-23 | 2 | 47 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.59E-31 | 3 | 68 | No hit | No description |
PRINTS | PR00404 | 8.4E-10 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-10 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRNENNLQVT FSKRRFGLFK KASELCTLCG AQILMIVFSP GGKVFSFGHP SVRELIYRFQ 60 NFHHNSLIPH QPNNNLQLVE SRPARNVQYL NEMLTHMLAK QEKAKHNRMT LDRVKQSREQ 120 RGIRWYEKDV KELDLTETDN LIGALQDVRT KLVSGMSHDS QLNVSHQNYM GETAVFGGGG 180 NVDVGGIDLF DQRMNTFNYN PIMGFPNQTP LVGYNNDGVS YNMNYMSSYN FNER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g004890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446775.1 | 1e-176 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A178UZM5 | 1e-101 | A0A178UZM5_ARATH; Uncharacterized protein | ||||
TrEMBL | O23222 | 1e-101 | O23222_ARATH; MADS-box protein | ||||
STRING | XP_010446775.1 | 1e-176 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 1e-100 | M-type_MADS family protein |