PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g004870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24406 Da PI: 9.8116 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.3 | 3e-21 | 18 | 62 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + n qvtfskR+ g++KKA+EL++LC+a++++i+fs+ gk++ + Csa12g004870.1 18 KEKNLQVTFSKRKFGLFKKASELCTLCGAQILMIVFSPAGKVFSF 62 56799*************************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.717 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-27 | 7 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.49E-36 | 7 | 83 | No hit | No description |
PRINTS | PR00404 | 3.5E-18 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-23 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-18 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-18 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MVKSNKGRQK IEMKKMRKEK NLQVTFSKRK FGLFKKASEL CTLCGAQILM IVFSPAGKVF 60 SFGHPSVREL IYRFQNFNHN SLIPHQPNNN LELAESRPDT NVQYLNEMLT HMLVKQEKAE 120 DTRMTLDRVK QSREQRGIRW YEKDVKELDV TETDNLIGAL QDVRKKLVSD MSHDSQLNVS 180 HQNYMGENAV FGGGGNVDVG GIDLFNPIMG FPN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 1e-17 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g004870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451030.1 | 1e-159 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A178UZM5 | 1e-87 | A0A178UZM5_ARATH; Uncharacterized protein | ||||
TrEMBL | O23222 | 1e-87 | O23222_ARATH; MADS-box protein | ||||
STRING | XP_010451030.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36590.1 | 5e-93 | M-type_MADS family protein |