PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g004870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24406 Da    PI: 9.8116
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g004870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33e-211862549
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     + n qvtfskR+ g++KKA+EL++LC+a++++i+fs+ gk++ +
  Csa12g004870.1 18 KEKNLQVTFSKRKFGLFKKASELCTLCGAQILMIVFSPAGKVFSF 62
                    56799*************************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.717666IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-27790IPR002100Transcription factor, MADS-box
CDDcd002658.49E-36783No hitNo description
PRINTSPR004043.5E-18828IPR002100Transcription factor, MADS-box
PfamPF003195.6E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVKSNKGRQK IEMKKMRKEK NLQVTFSKRK FGLFKKASEL CTLCGAQILM IVFSPAGKVF  60
SFGHPSVREL IYRFQNFNHN SLIPHQPNNN LELAESRPDT NVQYLNEMLT HMLVKQEKAE  120
DTRMTLDRVK QSREQRGIRW YEKDVKELDV TETDNLIGAL QDVRKKLVSD MSHDSQLNVS  180
HQNYMGENAV FGGGGNVDVG GIDLFNPIMG FPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-17796186Myocyte-specific enhancer factor 2A
3kov_B1e-17796186Myocyte-specific enhancer factor 2A
3kov_I1e-17796186Myocyte-specific enhancer factor 2A
3kov_J1e-17796186Myocyte-specific enhancer factor 2A
3p57_A1e-17796186Myocyte-specific enhancer factor 2A
3p57_B1e-17796186Myocyte-specific enhancer factor 2A
3p57_C1e-17796186Myocyte-specific enhancer factor 2A
3p57_D1e-17796186Myocyte-specific enhancer factor 2A
3p57_I1e-17796186Myocyte-specific enhancer factor 2A
3p57_J1e-17796186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g004870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451030.11e-159PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM51e-87A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232221e-87O23222_ARATH; MADS-box protein
STRINGXP_010451030.11e-159(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.15e-93M-type_MADS family protein