PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g004840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 214aa    MW: 23171.1 Da    PI: 7.0828
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g004840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-2078112135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Csa12g004840.1  78 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 112
                     ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.40472108IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-1772124IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-1373111No hitNo description
Gene3DG3DSA:3.30.50.103.7E-1776112IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.89E-1477109No hitNo description
PfamPF003204.5E-1878112IPR000679Zinc finger, GATA-type
PROSITE patternPS00344078103IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGFSMFFSAE NDVAHHSSPY ASVDCTLSLG TPSTRLCNDD DGCRFSSHTS DALGWDFLNG  60
AKKGSTGGGG NNRLSRRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASTVGNS  120
TTGGGSTAAG VPTSDHQAGA NHYNFINRDQ YASSSPWVHH HQHNTPYNYS PANNEYTFVG  180
DVRDVDHDAT SDPFLSWRLN VADRTSLVHD FTM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g004840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295060.0BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446770.11e-158PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-105GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R11e-116A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGXP_010446770.11e-157(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.14e-86GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]