PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g004570.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TALE

Protein Properties

Length: 748aa MW: 82234.5 Da PI: 6.8607

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g004570.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	524	561	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Csa12g004570.1 524 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 561 664459******************************88 PP
2	BELL	121	5.2e-39	382	453	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++++g g+a pYt+lA+ka+SrhFrcLkda+a q+ Csa12g004570.1 382 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIIMGQGAALPYTALAQKAMSRHFRCLKDAVAAQL 453 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.4E-74	311	451	IPR006563	POX domain
Pfam	PF07526	6.5E-48	316	450	IPR006563	POX domain
PROSITE profile	PS50071	12.568	502	565	IPR001356	Homeobox domain
CDD	cd00086	6.14E-12	505	566	No hit	No description
SMART	SM00389	1.2E-9	505	569	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.42E-17	507	572	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-29	508	571	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	522	561	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MGIAKTSSTT STILLKTHHN NSMSQDYHHH QQHQGGIFSF SNGFDRSDSP NLIAQQKQEH 60 QRVEEMDEES SVAGGSGIPV YETAGMLSEM FNFPGSSRGR RDLDHAAQSF RSNRQLLDDQ 120 HQNIPAMNAT DSATATAAAA MQLFLMNPPP PQQQPPTSPS STSTTRSHHN SSTLHMLLPP 180 TTTDHHQSYD HNNMSMHQLP HHHHHNQQMT WQSSSSDHHH HNNQTEIGTI HVENSGGRGL 240 SLSLSSSLEA AAKAEEYRNL YYGSNSSNAS SHHHHQYNQF KTLLANSSQH HQVLNQFRSS 300 PTAATAPSSS IGAVNILRHS RFTTAAQELL EELCSVGRGF LKKNKLKNSS NPNTSGGDGG 360 GGGSSPSSAG AIKDHPPLSA SDRIEHQRRK VKLLTMLEEV DRRYNHYCEQ MQMVVNSFDI 420 IMGQGAALPY TALAQKAMSR HFRCLKDAVA AQLKQSCELL GDKDGAGMSS SGLTKGETPR 480 LRLLEQSLRQ QRAFHQMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL 540 ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQESKERER EEELEVNEED QETKNSNNDK 600 STKSNNNESN FTASRTTSQT PIITAPDVSD ADADAAVAVA TGHRLRSDIN AYENDPSSLL 660 LPSSYSNAAA SSADLGSRYG GSAAFSAVAT CQQGVGGFDD DADMGGVNVI RFGTNPTGDV 720 SLTLGLRHAG NMPDKDPSFC VREFGGF*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MGIAKTSSTT STILLKTHHN NSMSQDYHHH QQHQGGIFSF SNGFDRSDSP NLIAQQKQEH  60
QRVEEMDEES SVAGGSGIPV YETAGMLSEM FNFPGSSRGR RDLDHAAQSF RSNRQLLDDQ  120
HQNIPAMNAT DSATATAAAA MQLFLMNPPP PQQQPPTSPS STSTTRSHHN SSTLHMLLPP  180
TTTDHHQSYD HNNMSMHQLP HHHHHNQQMT WQSSSSDHHH HNNQTEIGTI HVENSGGRGL  240
SLSLSSSLEA AAKAEEYRNL YYGSNSSNAS SHHHHQYNQF KTLLANSSQH HQVLNQFRSS  300
PTAATAPSSS IGAVNILRHS RFTTAAQELL EELCSVGRGF LKKNKLKNSS NPNTSGGDGG  360
GGGSSPSSAG AIKDHPPLSA SDRIEHQRRK VKLLTMLEEV DRRYNHYCEQ MQMVVNSFDI  420
IMGQGAALPY TALAQKAMSR HFRCLKDAVA AQLKQSCELL GDKDGAGMSS SGLTKGETPR  480
LRLLEQSLRQ QRAFHQMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL  540
ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQESKERER EEELEVNEED QETKNSNNDK  600
STKSNNNESN FTASRTTSQT PIITAPDVSD ADADAAVAVA TGHRLRSDIN AYENDPSSLL  660
LPSSYSNAAA SSADLGSRYG GSAAFSAVAT CQQGVGGFDD DADMGGVNVI RFGTNPTGDV  720
SLTLGLRHAG NMPDKDPSFC VREFGGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-16	511	569	5	63	Homeobox protein Meis2
3k2a_B	1e-16	511	569	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g004570.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF173816	0.0	AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446733.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Refseq	XP_019089796.1	0.0	PREDICTED: BEL1-like homeodomain protein 2
Swissprot	Q9SW80	0.0	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	R0GH26	0.0	R0GH26_9BRAS; Uncharacterized protein
STRING	XP_010446733.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	0.0	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]