PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g004470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 346aa MW: 39084.9 Da PI: 6.8558

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g004470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	198	252	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH++Fv+a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYR++ Csa12g004470.1 198 QRRRWSQDLHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMH 252 8****************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.598	194	254	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-16	194	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-28	194	255	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-25	198	252	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	199	250	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGLNLNLSIY SLPKPLSQFL DEVSRIDDNK SKLSEIDGYV GRLEEERKKI DVFKRELPLC 60 MLLLNEAIGM LAEARKGSSV MASNGKFKDG EGAKLETDKK SWMSSAQLWI SNPNSQFQST 120 NKEDDRCVSQ NPFQTCNYPN QGGAFLPFNP PPPPPPPAPL SLMTPTSDMM MDCSRIEQNH 180 QFNRPSQLQS HHIQKKEQRR RWSQDLHRKF VDALHRLGGP QVATPKQIRD LMKVDGLTND 240 EVKSHLQKYR MHIRKHPLHP SKTLSSSDQP GVLERESQSL ISLSRSDSPQ SPLVARGLFS 300 SNNGGHSSEE AEVDDDEEEE EEEKSDGRSC RNEAKKKRQV LDLEL*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGLNLNLSIY SLPKPLSQFL DEVSRIDDNK SKLSEIDGYV GRLEEERKKI DVFKRELPLC  60
MLLLNEAIGM LAEARKGSSV MASNGKFKDG EGAKLETDKK SWMSSAQLWI SNPNSQFQST  120
NKEDDRCVSQ NPFQTCNYPN QGGAFLPFNP PPPPPPPAPL SLMTPTSDMM MDCSRIEQNH  180
QFNRPSQLQS HHIQKKEQRR RWSQDLHRKF VDALHRLGGP QVATPKQIRD LMKVDGLTND  240
EVKSHLQKYR MHIRKHPLHP SKTLSSSDQP GVLERESQSL ISLSRSDSPQ SPLVARGLFS  300
SNNGGHSSEE AEVDDDEEEE EEEKSDGRSC RNEAKKKRQV LDLEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g004470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316664	0.0	AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17.
GenBank	BT028985	0.0	BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446723.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X2
Swissprot	F4JRB0	0.0	HHO5_ARATH; Transcription factor HHO5
TrEMBL	R0GZX2	0.0	R0GZX2_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010446722.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-178	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]