PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g004160.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 79aa MW: 8656.75 Da PI: 10.1891

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g004160.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.2	3e-16	2	44	10	55
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +k+g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Csa12g004160.1 2 RKWGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVYYLRG 44 46********9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.9E-30	1	58	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.981	1	52	IPR001471	AP2/ERF domain
CDD	cd00018	2.76E-23	1	54	No hit	No description
Gene3D	G3DSA:3.30.730.10	4.1E-27	1	53	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-10	2	44	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.42E-19	2	53	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTPEA AARAYDTAVY YLRGPSARLN FPELLAGVTV 60 AGGGDSKQHS HIESGSHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g004160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232512	9e-68	AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432078.1	3e-40	PREDICTED: ethylene-responsive transcription factor RAP2-10-like
Refseq	XP_010451021.1	3e-40	PREDICTED: ethylene-responsive transcription factor RAP2-10-like, partial
Swissprot	O22174	2e-38	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBL	D7MAQ1	3e-38	D7MAQ1_ARALL; Uncharacterized protein
STRING	XP_010432078.1	1e-39	(Camelina sativa)
STRING	XP_010451021.1	1e-39	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	8e-41	DREB and EAR motif protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171]