PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g003920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 21561.3 Da PI: 9.9571 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.5 | 6.3e-22 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie+ +r+++f+kR+ng+lKKA+ELS LCd+ v +i fs++gkl+ + Csa12g003920.1 9 KKIEDRQQRNISFAKRKNGLLKKAYELSLLCDVAVGLIFFSPSGKLFIF 57 68********************************************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.455 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-24 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRVKIQMKK IEDRQQRNIS FAKRKNGLLK KAYELSLLCD VAVGLIFFSP SGKLFIFDAK 60 LSIEDIIEKY NSQPTYKNAR LKDATVKIKL DDFQIVYFCF LMAIEELIAK MRKESMRSGP 120 NLRKIHDDGK IDECRIKLAE VERELGRYLK SPNQWESLAE LIDRVELLET TLAKVQSRKK 180 ELESK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-16 | 1 | 74 | 1 | 75 | MEF2 CHIMERA |
6byy_B | 2e-16 | 1 | 74 | 1 | 75 | MEF2 CHIMERA |
6byy_C | 2e-16 | 1 | 74 | 1 | 75 | MEF2 CHIMERA |
6byy_D | 2e-16 | 1 | 74 | 1 | 75 | MEF2 CHIMERA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g003920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446661.1 | 1e-111 | PREDICTED: agamous-like MADS-box protein AGL104 | ||||
STRING | XP_010446661.1 | 1e-111 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17254 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 6e-24 | AGAMOUS-like 104 |