PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g003810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 243aa    MW: 26751.5 Da    PI: 9.2273
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g003810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  Csa12g003810.1   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQA 96 
                     6*********************9999777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Csa12g003810.1  97 AVETVLR 103
                     *998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6651107IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPELQR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLFESPSLM  120
ISSDKSSEIF HRDVSRNGNH HRHFSTSGSK TEMKDSPVER KRVKSDSDLD LQVNHQGLTL  180
TASAVRVPFI PPPLFRKAVN GDRPGSPSEE SVTTSCWENG MRGDNNKYKR NKGDKKLLNL  240
FV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g003810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738740.0AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721440.0AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY0872910.0AY087291.1 Arabidopsis thaliana clone 33704 mRNA, complete sequence.
GenBankAY1229760.0AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446650.10.0PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE81e-153LBD39_ARATH; LOB domain-containing protein 39
TrEMBLD7MAL21e-152D7MAL2_ARALL; Uncharacterized protein
STRINGXP_010446650.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-155LOB domain-containing protein 39