PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g003580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 283aa MW: 30816.7 Da PI: 8.4871 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.2e-18 | 125 | 179 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Csa12g003580.1 125 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQTLARQLNLRPRQVEVWFQNRRARTK 179 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 2e-39 | 125 | 214 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLE+sF+ +++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke ++L+ +l Csa12g003580.1 125 RKKLRLTKQQSALLEDSFKLHSTLNPKQKQTLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLK-AL 214 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-17 | 113 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-15 | 123 | 185 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-18 | 123 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-15 | 125 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-15 | 125 | 182 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.4E-25 | 181 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.1E-9 | 181 | 215 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGFDDSCNTG LVLGLSLSPA SNNYNHAIKK ASATVDHRLI RLDPSLTLSL SGESYKTKTV 60 AGAGDQICRQ TSSHSGISSF SSGRVKRERE ICGGDGEEEA EETTERVVSS RVSDDHDDEE 120 GVSARKKLRL TKQQSALLED SFKLHSTLNP KQKQTLARQL NLRPRQVEVW FQNRRARTKL 180 KQTEVDCEFL KKCCETLTDE NRRLQKELQD LKALKLAQPF YMHMPAATLT MCPSCERLGG 240 SGGGVGAGGG TAAVDGETAK GAFSIVTKPR FYNPFTNPSA AC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 181 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g003580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU09336 | 0.0 | U09336.1 Arabidopsis thaliana clone HAT22 homeobox protein mRNA, complete cds. | |||
GenBank | AY087563 | 0.0 | AY087563.1 Arabidopsis thaliana clone 36691 mRNA, complete sequence. | |||
GenBank | BT002318 | 0.0 | BT002318.1 Arabidopsis thaliana clone C105403 putative homeobox protein HAT22 (At4g37790) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446622.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22 isoform X1 | ||||
Swissprot | P46604 | 1e-170 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | D7MA03 | 1e-172 | D7MA03_ARALL; Homeobox-leucine zipper protein 22 | ||||
STRING | XP_010446622.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-151 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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