PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g002300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 303aa    MW: 33997.3 Da    PI: 8.384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g002300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.6e-32221279159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a+dp++v++tYeg+H h+
  Csa12g002300.1 221 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHS 279
                     59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33206279IPR003657WRKY domain
SuperFamilySSF1182902.88E-28214280IPR003657WRKY domain
PROSITE profilePS5081129.344216281IPR003657WRKY domain
SMARTSM007749.9E-37221280IPR003657WRKY domain
PfamPF031064.1E-25222278IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGTINQGVSF FDESQTIINP NNSNHLGFFF SFPSHSLSSS SSTSSSSPSS LVSPFLGHHS  60
LNSFLHNNPS TFVTQPQDPI NLMANLPQTL ISSLSSSKHR DDHDGFLNLD HHRLTGGRSS  120
QRPSPNPWAW SSQAGYGCSQ KNNHGSEIDI DDNDDEVGHG GGINDGISDH HNDHDTARRH  180
DKHNTGSLGV VSSLKIKKLK TRRKVREPRF CFKTLSEVDV LDDGYRWRKY GQKVVKNTQH  240
PRSYYRCTQD KCRVKKRVER LADDPRMVIT TYEGRHLHSP SNHLDDDSLS SSHHSPLSNF  300
FW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-25213278974Probable WRKY transcription factor 4
2lex_A6e-25213278974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g002300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211530.0AF421153.1 Arabidopsis thaliana WRKY transcription factor 13 (WRKY13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446487.10.0PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB71e-170WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A384L7281e-167A0A384L728_ARATH; WRKY13
TrEMBLC0SVM61e-167C0SVM6_ARATH; Uncharacterized protein At4g39410 (Fragment)
STRINGXP_010446487.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-145WRKY DNA-binding protein 13