PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g001900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

DBB

Protein Properties

Length: 474aa MW: 52911.2 Da PI: 6.7986

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g001900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.3e-06	76	104	6	34
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeH 34 C+ ++++e++ fC ++ lC+ C + H Csa12g001900.1 76 CDVCDKEEASVFCCADEAALCNGCDRHVH 104 *************************9988 PP
2	zf-B_box	27.8	5.2e-09	126	163	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++ C+ ++e ++ lfC++++ lC++C +H+ Ht Csa12g001900.1 126 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 163 789*****************************767876 PP
3	zf-B_box	19.9	1.5e-06	295	323	12	38
zf-B_box 12 kelqlfCedCqqllCedClleeHkg..Ht 38 ++ lfC++++ lC++C +H+ Ht Csa12g001900.1 295 RRALLFCQEDRAILCRECDIPIHQAneHT 323 45889******************767876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.727	71	118	IPR000315	B-box-type zinc finger
SMART	SM00336	9.4E-10	71	118	IPR000315	B-box-type zinc finger
CDD	cd00021	5.59E-6	76	104	No hit	No description
PROSITE profile	PS50119	10.182	124	171	IPR000315	B-box-type zinc finger
SMART	SM00336	6.3E-16	124	171	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.9E-7	126	164	IPR000315	B-box-type zinc finger
CDD	cd00021	3.98E-10	127	171	No hit	No description
SMART	SM00336	7.8E-7	288	331	IPR000315	B-box-type zinc finger
CDD	cd00021	5.18E-6	294	331	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
LPFCPHLYPI NLYIHSPPHE CLSIHKHYYI VLVQGYKLRE IERVCEKRQF CDIREKKGLI 60 LLIRKRKKVE KMKIWCDVCD KEEASVFCCA DEAALCNGCD RHVHFANKLA GKHLRFSLTS 120 PTFKDAPLCD ICGERRALLF CQEDRAILCR ECDIPIHQAN EHTKKHNRFL LTGVKISASP 180 SAYPRSSNSN SPATLGRAKT RPKSVSSEVP SSASNEVFMS SPSTTTSNGY YGIEENYHQV 240 SDSGSGSGCT GTGSISEYLM ETLPGWRVED LLEHPSCVSY EDNIITNNNE SYSERRALLF 300 CQEDRAILCR ECDIPIHQAN EHTKKHNRFL LTGVKISASP SAYPRSSNSN SPATLGRAKT 360 RPKSVSSEVP SSASNEVFMS SPSTTTSNGY YGIEENYHQV SDSGSGSGCT GTGSISEYLM 420 ETLPGWRVED LLEHPSCVSY EDNIITNNNE SYSVYDGSSQ YQHEGFWEQK PFS*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

LPFCPHLYPI NLYIHSPPHE CLSIHKHYYI VLVQGYKLRE IERVCEKRQF CDIREKKGLI  60
LLIRKRKKVE KMKIWCDVCD KEEASVFCCA DEAALCNGCD RHVHFANKLA GKHLRFSLTS  120
PTFKDAPLCD ICGERRALLF CQEDRAILCR ECDIPIHQAN EHTKKHNRFL LTGVKISASP  180
SAYPRSSNSN SPATLGRAKT RPKSVSSEVP SSASNEVFMS SPSTTTSNGY YGIEENYHQV  240
SDSGSGSGCT GTGSISEYLM ETLPGWRVED LLEHPSCVSY EDNIITNNNE SYSERRALLF  300
CQEDRAILCR ECDIPIHQAN EHTKKHNRFL LTGVKISASP SAYPRSSNSN SPATLGRAKT  360
RPKSVSSEVP SSASNEVFMS SPSTTTSNGY YGIEENYHQV SDSGSGSGCT GTGSISEYLM  420
ETLPGWRVED LLEHPSCVSY EDNIITNNNE SYSVYDGSSQ YQHEGFWEQK PFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	67	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g001900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK230379	0.0	AK230379.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-29-C17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446431.1	1e-149	PREDICTED: B-box zinc finger protein 20
Swissprot	Q0IGM7	1e-132	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	D7MGB0	1e-132	D7MGB0_ARALL; Zinc finger (B-box type) family protein
STRING	XP_010446431.1	1e-148	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6597	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	1e-121	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]