PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g001170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 188aa MW: 20926.1 Da PI: 4.6269 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 21.7 | 3.9e-07 | 112 | 136 | 2 | 26 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLg 26 e++i+le+l+++F++++kdAAk++g Csa12g001170.1 112 ENDITLETLKQHFAGSLKDAAKNIG 136 789********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MLDLHAALAV PLLTRHNRTV QFVLEFFFPR DCLDIQTQRL TLVSQLNQRF QSSPHLMVDD 60 QLAKDVRDTA TPLTDHSSRS AQEEATDHKG KSLSFSSSSS SLESRKRKTR AENDITLETL 120 KQHFAGSLKD AAKNIGDDDD DDCITYCSMS DDLEEDLQTA RNLKVAIEED QESWTFSSKT 180 AGGDGLC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 108 | SRKRKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g001170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069558 | 4e-69 | AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence. | |||
GenBank | AL035538 | 4e-69 | AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project). | |||
GenBank | AL035539 | 4e-69 | AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project). | |||
GenBank | AL161593 | 4e-69 | AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89. | |||
GenBank | CP002687 | 4e-69 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010436926.1 | 3e-74 | PREDICTED: protein NLP3-like | ||||
Swissprot | Q9SVF1 | 4e-50 | NLP3_ARATH; Protein NLP3 | ||||
TrEMBL | R0F7T3 | 3e-55 | R0F7T3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010436926.1 | 1e-73 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38340.1 | 1e-49 | Nin-like family protein |
Publications ? help Back to Top | |||
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