PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g001000.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 520aa MW: 59017 Da PI: 6.6725

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g001000.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.4	3.7e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ +++eHnH+l+p Csa12g001000.1 89 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWLVSGFVKEHNHDLVP 180 9*************************************999888555667889********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-29	89	180	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	1.8E-12	293	339	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	309	341	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	316	343	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HGLDDDDMLD SPIMPCGISL GNSENYFPNQ 60 EEEEEQQDLL DLEPYDGLEF ESEEAAKAFY NSYARRIGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNM NEKRTKDREI KRPRTITRVG CKASLSVKMH DSGKWLVSGF VKEHNHDLVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKSRL EKEVKADYDT 240 MNSPPVLKTP SPMEKQASDL YTRKLFIRFQ EELVGTLTFM ASKAHDDGDL VTYTVAKYGE 300 AHKAHFIKFN VLEMRANCSC QMFEFSGIIC RHILAVFRVT NLLTLPPYYI LKRWTRNAKS 360 SVIFDDYNLH AYANYLESHT VRYNTLRHKA SNFLQEAGKS LYTCDVAVVA LQEAAKTVSL 420 AMNKEVRRTM ANGHFKETSS VTDGKRMCCN EDCQQDVPAQ PEDEMDKKIN QLRNELELAN 480 KKCEAYRTNL LSVLKEMDDQ KLQVSIKVQN IKISLKDNL*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HGLDDDDMLD SPIMPCGISL GNSENYFPNQ  60
EEEEEQQDLL DLEPYDGLEF ESEEAAKAFY NSYARRIGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNM NEKRTKDREI KRPRTITRVG CKASLSVKMH DSGKWLVSGF VKEHNHDLVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKSRL EKEVKADYDT  240
MNSPPVLKTP SPMEKQASDL YTRKLFIRFQ EELVGTLTFM ASKAHDDGDL VTYTVAKYGE  300
AHKAHFIKFN VLEMRANCSC QMFEFSGIIC RHILAVFRVT NLLTLPPYYI LKRWTRNAKS  360
SVIFDDYNLH AYANYLESHT VRYNTLRHKA SNFLQEAGKS LYTCDVAVVA LQEAAKTVSL  420
AMNKEVRRTM ANGHFKETSS VTDGKRMCCN EDCQQDVPAQ PEDEMDKKIN QLRNELELAN  480
KKCEAYRTNL LSVLKEMDDQ KLQVSIKVQN IKISLKDNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g001000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK319073	0.0	AK319073.1 Arabidopsis thaliana AT4G38180 mRNA, complete cds, clone: RAFL23-02-J06.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010497176.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	R0H1Z6	0.0	R0H1Z6_9BRAS; Uncharacterized protein
STRING	XP_010497176.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23888	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]