PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g104640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 371aa    MW: 40461.3 Da    PI: 6.7806
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g104640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.3e-18282316135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Csa11g104640.1 282 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 316
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.8E-10235370IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.793276312IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-16276330IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-14279339No hitNo description
Gene3DG3DSA:3.30.50.105.2E-15280314IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.59E-14281329No hitNo description
PROSITE patternPS003440282307IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16282316IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
RSFLLLLLLL ATAPSSSSLS FVLILFSRVF SIGKMEQAAL KSSIRKEMAF KTTPPVFEDF  60
LAVTTTTTAQ NADDFSVDDL LDLSNDDVFA DDDTVLLNPQ EHQDMARDEL NDVAGDALPR  120
RSNDFSGCDD FGSELSVPAD DLANLEWLSH FVEDSFTEYS GPNLTGTPIE KPAWLTGDRK  180
HPVTPATEES CFKSPVPAKA RSKRHRNGVK SWSLGSSSSS GPSSSGSTSS SSSSGPSSPW  240
FSGSELLDPM VTLERPPFPK KHKKRSAESA FCGQLLQPQR RCSHCGVQKT PQWRAGPMGA  300
KTLCNACGVR YKSGRLLPEY RPACSPTFSS ELHSNHHRKV MEMRRKKEPA SDNETGLNQL  360
VQSPQAVPSF *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g104640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1364500.0AY136450.1 Arabidopsis thaliana GATA-binding transcription factor-like protein (At5g66320) mRNA, complete cds.
GenBankBT0103670.0BT010367.1 Arabidopsis thaliana At5g66320 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444812.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH571e-175GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-172A0A178UHW1_ARATH; GATA transcription factor
STRINGXP_010444812.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-162GATA transcription factor 5