PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g104290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 318aa MW: 36490.5 Da PI: 5.3185 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.6e-19 | 77 | 130 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ ++e++A +lgL+ rqV vWFqNrRa++k+ Csa11g104290.1 77 KRKLTNEQVNMLEYSFGNEPKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 130 4589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118 | 5.1e-38 | 76 | 167 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+l++eqv++LE sF +e kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++da++ ++++Le++v +L+e+l+e Csa11g104290.1 76 RKRKLTNEQVNMLEYSFGNEPKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDAVVLSQCQLESQVLKLTEQLSE 167 8****************9999*******************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.4E-17 | 74 | 135 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.196 | 76 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.17E-14 | 76 | 132 | No hit | No description |
Pfam | PF00046 | 1.3E-16 | 77 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.15E-17 | 77 | 139 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 78 | 138 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.9E-5 | 102 | 111 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.9E-5 | 111 | 127 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDHGRLMEED QMVLGSQVYP YTTRTQTSQC IIVNQIDGSS SGGEGSKPVK RRRKRRSKSS 60 SATNEGDVAE IGGMLRKRKL TNEQVNMLEY SFGNEPKLES GRKEKIAGEL GLDPRQVAVW 120 FQNRRARWKN KKLEEEYAKL KNHHDAVVLS QCQLESQVLK LTEQLSEAQN EIRKLSERLE 180 EMPTNSSSSS LSVEANNDAQ FDFELAPETN YNNIPFYMLD NXHLFRHLIL IHHLGKNYSV 240 LKLTEQLSEA QNEIRKLSER LEEMPTNSSS SSLSVEANND AQFDFELAPE TNYNNIPFYM 300 LDNNYLQSME YWDGLYV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 55 | KRRRKRR |
2 | 74 | 79 | LRKRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g104290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY683477 | 0.0 | AY683477.1 Arabidopsis thaliana homeodomain protein (HB53) mRNA, complete cds. | |||
GenBank | BT024847 | 0.0 | BT024847.1 Arabidopsis thaliana At5g66700 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010444751.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein ATHB-53-like | ||||
Swissprot | Q9LVR0 | 1e-117 | ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53 | ||||
TrEMBL | R0GNJ1 | 1e-121 | R0GNJ1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010444751.1 | 1e-135 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12602 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66700.1 | 1e-116 | homeobox 53 |
Publications ? help Back to Top | |||
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